Gene : Medtr2g084735 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11472:SF1 - TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPD SUBUNIT Description:  DNA repair helicase (rad3)
Genomic Order:  4502 Name:  ? Medtr2g084735
Secondary Identifier:  ? PAC:31066270
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g084735 0.5kb upstream 0.5kb upstream 11690 true chr2: 35933273-35944962 Medicago truncatula
Medtr2g084735 0.5kb upstream 0.5kb upstream 500 false chr2: 35933273-35933772 Medicago truncatula
Medtr2g084735 0.5kb downstream 0.5kb downstream 11690 true chr2: 35933773-35945462 Medicago truncatula
Medtr2g084735 0.5kb downstream 0.5kb downstream 500 false chr2: 35944963-35945462 Medicago truncatula
Medtr2g084735 1.0kb upstream 1.0kb upstream 12190 true chr2: 35932773-35944962 Medicago truncatula
Medtr2g084735 1.0kb upstream 1.0kb upstream 1000 false chr2: 35932773-35933772 Medicago truncatula
Medtr2g084735 1.0kb downstream 1.0kb downstream 12190 true chr2: 35933773-35945962 Medicago truncatula
Medtr2g084735 1.0kb downstream 1.0kb downstream 1000 false chr2: 35944963-35945962 Medicago truncatula
Medtr2g084735 2.0kb upstream 2.0kb upstream 13190 true chr2: 35931773-35944962 Medicago truncatula
Medtr2g084735 2.0kb upstream 2.0kb upstream 2000 false chr2: 35931773-35933772 Medicago truncatula
Medtr2g084735 2.0kb downstream 2.0kb downstream 13190 true chr2: 35933773-35946962 Medicago truncatula
Medtr2g084735 2.0kb downstream 2.0kb downstream 2000 false chr2: 35944963-35946962 Medicago truncatula
Medtr2g084735 5.0kb upstream 5.0kb upstream 16190 true chr2: 35928773-35944962 Medicago truncatula
Medtr2g084735 5.0kb upstream 5.0kb upstream 5000 false chr2: 35928773-35933772 Medicago truncatula
Medtr2g084735 5.0kb downstream 5.0kb downstream 16190 true chr2: 35933773-35949962 Medicago truncatula
Medtr2g084735 5.0kb downstream 5.0kb downstream 5000 false chr2: 35944963-35949962 Medicago truncatula
Medtr2g084735 10.0kb upstream 10.0kb upstream 21190 true chr2: 35923773-35944962 Medicago truncatula
Medtr2g084735 10.0kb upstream 10.0kb upstream 10000 false chr2: 35923773-35933772 Medicago truncatula
Medtr2g084735 10.0kb downstream 10.0kb downstream 21190 true chr2: 35933773-35954962 Medicago truncatula
Medtr2g084735 10.0kb downstream 10.0kb downstream 10000 false chr2: 35944963-35954962 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304369 5265 Fabidae View MSA
124062855 5270 Rosid View MSA
123737964 5271 Pentapetalae View MSA
122790118 5272 Eudicot View MSA
122046497 5273 Angiosperm View MSA
121344254 5274 Embryophyte View MSA
123426727 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.314       High
cufflinks 0.75        
cufflinks 0.981        
cufflinks 0.481        
cufflinks 0.961        
cufflinks 0.214       Low
cufflinks 0.659        
cufflinks 0.757        
cufflinks 0.543        

0 Strain