Gene : Medtr2g072470 M. truncatula Mt4.0v1
Defline:  (1 of 1) 2.5.1.30 - Heptaprenyl diphosphate synthase / Trans-hexaprenyltranstransferase Description:  solanesyl diphosphate synthase
Genomic Order:  3810 Name:  ? Medtr2g072470
Secondary Identifier:  ? PAC:31067116
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula HEXPPSYN-PWY Medicago truncatula pathologic  
Mtruncatula PWY-5120 Medicago truncatula pathologic  
Mtruncatula PWY-5783 Medicago truncatula pathologic  
Mtruncatula PWY-5805 Medicago truncatula pathologic  
Mtruncatula PWY-5807 Medicago truncatula pathologic  
Mtruncatula PWY-5910 Medicago truncatula pathologic  
Mtruncatula PWY-6520 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g072470 0.5kb upstream 0.5kb upstream 4643 true chr2: 30506990-30511632 Medicago truncatula
Medtr2g072470 0.5kb upstream 0.5kb upstream 500 false chr2: 30511133-30511632 Medicago truncatula
Medtr2g072470 0.5kb downstream 0.5kb downstream 4643 true chr2: 30506490-30511132 Medicago truncatula
Medtr2g072470 0.5kb downstream 0.5kb downstream 500 false chr2: 30506490-30506989 Medicago truncatula
Medtr2g072470 1.0kb upstream 1.0kb upstream 5143 true chr2: 30506990-30512132 Medicago truncatula
Medtr2g072470 1.0kb upstream 1.0kb upstream 1000 false chr2: 30511133-30512132 Medicago truncatula
Medtr2g072470 1.0kb downstream 1.0kb downstream 5143 true chr2: 30505990-30511132 Medicago truncatula
Medtr2g072470 1.0kb downstream 1.0kb downstream 1000 false chr2: 30505990-30506989 Medicago truncatula
Medtr2g072470 2.0kb upstream 2.0kb upstream 6143 true chr2: 30506990-30513132 Medicago truncatula
Medtr2g072470 2.0kb upstream 2.0kb upstream 2000 false chr2: 30511133-30513132 Medicago truncatula
Medtr2g072470 2.0kb downstream 2.0kb downstream 6143 true chr2: 30504990-30511132 Medicago truncatula
Medtr2g072470 2.0kb downstream 2.0kb downstream 2000 false chr2: 30504990-30506989 Medicago truncatula
Medtr2g072470 5.0kb upstream 5.0kb upstream 9143 true chr2: 30506990-30516132 Medicago truncatula
Medtr2g072470 5.0kb upstream 5.0kb upstream 5000 false chr2: 30511133-30516132 Medicago truncatula
Medtr2g072470 5.0kb downstream 5.0kb downstream 9143 true chr2: 30501990-30511132 Medicago truncatula
Medtr2g072470 5.0kb downstream 5.0kb downstream 5000 false chr2: 30501990-30506989 Medicago truncatula
Medtr2g072470 10.0kb upstream 10.0kb upstream 14143 true chr2: 30506990-30521132 Medicago truncatula
Medtr2g072470 10.0kb upstream 10.0kb upstream 10000 false chr2: 30511133-30521132 Medicago truncatula
Medtr2g072470 10.0kb downstream 10.0kb downstream 14143 true chr2: 30496990-30511132 Medicago truncatula
Medtr2g072470 10.0kb downstream 10.0kb downstream 10000 false chr2: 30496990-30506989 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041065 5273 Angiosperm View MSA
122299175 5265 Fabidae View MSA
124065347 5270 Rosid View MSA
123746184 5271 Pentapetalae View MSA
122791358 5272 Eudicot View MSA
121345449 5274 Embryophyte View MSA
123424009 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.247        
cufflinks 27.129     High High
cufflinks 13.137     High  
cufflinks 1.141        
cufflinks 20.808     High High
cufflinks 0.676       Low
cufflinks 1.158        
cufflinks 20.096     High  
cufflinks 0.817       Low

0 Strain