Gene : Medtr2g060910 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR37173:SF1 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Description:  hypothetical protein
Genomic Order:  3311 Name:  ? Medtr2g060910
Secondary Identifier:  ? PAC:31067668
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g060910 0.5kb upstream 0.5kb upstream 10460 true chr2: 25838005-25848464 Medicago truncatula
Medtr2g060910 0.5kb upstream 0.5kb upstream 500 false chr2: 25847965-25848464 Medicago truncatula
Medtr2g060910 0.5kb downstream 0.5kb downstream 10460 true chr2: 25837505-25847964 Medicago truncatula
Medtr2g060910 0.5kb downstream 0.5kb downstream 500 false chr2: 25837505-25838004 Medicago truncatula
Medtr2g060910 1.0kb upstream 1.0kb upstream 10960 true chr2: 25838005-25848964 Medicago truncatula
Medtr2g060910 1.0kb upstream 1.0kb upstream 1000 false chr2: 25847965-25848964 Medicago truncatula
Medtr2g060910 1.0kb downstream 1.0kb downstream 10960 true chr2: 25837005-25847964 Medicago truncatula
Medtr2g060910 1.0kb downstream 1.0kb downstream 1000 false chr2: 25837005-25838004 Medicago truncatula
Medtr2g060910 2.0kb upstream 2.0kb upstream 11960 true chr2: 25838005-25849964 Medicago truncatula
Medtr2g060910 2.0kb upstream 2.0kb upstream 2000 false chr2: 25847965-25849964 Medicago truncatula
Medtr2g060910 2.0kb downstream 2.0kb downstream 11960 true chr2: 25836005-25847964 Medicago truncatula
Medtr2g060910 2.0kb downstream 2.0kb downstream 2000 false chr2: 25836005-25838004 Medicago truncatula
Medtr2g060910 5.0kb upstream 5.0kb upstream 14960 true chr2: 25838005-25852964 Medicago truncatula
Medtr2g060910 5.0kb upstream 5.0kb upstream 5000 false chr2: 25847965-25852964 Medicago truncatula
Medtr2g060910 5.0kb downstream 5.0kb downstream 14960 true chr2: 25833005-25847964 Medicago truncatula
Medtr2g060910 5.0kb downstream 5.0kb downstream 5000 false chr2: 25833005-25838004 Medicago truncatula
Medtr2g060910 10.0kb upstream 10.0kb upstream 19960 true chr2: 25838005-25857964 Medicago truncatula
Medtr2g060910 10.0kb upstream 10.0kb upstream 10000 false chr2: 25847965-25857964 Medicago truncatula
Medtr2g060910 10.0kb downstream 10.0kb downstream 19960 true chr2: 25828005-25847964 Medicago truncatula
Medtr2g060910 10.0kb downstream 10.0kb downstream 10000 false chr2: 25828005-25838004 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304318 5265 Fabidae View MSA
124065426 5270 Rosid View MSA
123746195 5271 Pentapetalae View MSA
122787235 5272 Eudicot View MSA
122045095 5273 Angiosperm View MSA
121345714 5274 Embryophyte View MSA
123425917 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.204        
cufflinks 0.302        
cufflinks 0.266        
cufflinks 0.277        
cufflinks 0.334       High
cufflinks 0.138     Low Low
cufflinks 0.221        
cufflinks 0.242        
cufflinks 0.329       High

0 Strain