Gene : Medtr3g005080 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR12914 - PARTNER OF SLD5 Description:  DNA replication complex GINS protein PSF1
Genomic Order:  7 Name:  ? Medtr3g005080
Secondary Identifier:  ? PAC:31057721
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g005080 0.5kb upstream 0.5kb upstream 5145 true chr3: 42949-48093 Medicago truncatula
Medtr3g005080 0.5kb upstream 0.5kb upstream 500 false chr3: 42949-43448 Medicago truncatula
Medtr3g005080 0.5kb downstream 0.5kb downstream 5145 true chr3: 43449-48593 Medicago truncatula
Medtr3g005080 0.5kb downstream 0.5kb downstream 500 false chr3: 48094-48593 Medicago truncatula
Medtr3g005080 1.0kb upstream 1.0kb upstream 5645 true chr3: 42449-48093 Medicago truncatula
Medtr3g005080 1.0kb upstream 1.0kb upstream 1000 false chr3: 42449-43448 Medicago truncatula
Medtr3g005080 1.0kb downstream 1.0kb downstream 5645 true chr3: 43449-49093 Medicago truncatula
Medtr3g005080 1.0kb downstream 1.0kb downstream 1000 false chr3: 48094-49093 Medicago truncatula
Medtr3g005080 2.0kb upstream 2.0kb upstream 6645 true chr3: 41449-48093 Medicago truncatula
Medtr3g005080 2.0kb upstream 2.0kb upstream 2000 false chr3: 41449-43448 Medicago truncatula
Medtr3g005080 2.0kb downstream 2.0kb downstream 6645 true chr3: 43449-50093 Medicago truncatula
Medtr3g005080 2.0kb downstream 2.0kb downstream 2000 false chr3: 48094-50093 Medicago truncatula
Medtr3g005080 5.0kb upstream 5.0kb upstream 9645 true chr3: 38449-48093 Medicago truncatula
Medtr3g005080 5.0kb upstream 5.0kb upstream 5000 false chr3: 38449-43448 Medicago truncatula
Medtr3g005080 5.0kb downstream 5.0kb downstream 9645 true chr3: 43449-53093 Medicago truncatula
Medtr3g005080 5.0kb downstream 5.0kb downstream 5000 false chr3: 48094-53093 Medicago truncatula
Medtr3g005080 10.0kb upstream 10.0kb upstream 14645 true chr3: 33449-48093 Medicago truncatula
Medtr3g005080 10.0kb upstream 10.0kb upstream 10000 false chr3: 33449-43448 Medicago truncatula
Medtr3g005080 10.0kb downstream 10.0kb downstream 14645 true chr3: 43449-58093 Medicago truncatula
Medtr3g005080 10.0kb downstream 10.0kb downstream 10000 false chr3: 48094-58093 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308679 5265 Fabidae View MSA
124065475 5270 Rosid View MSA
123736911 5271 Pentapetalae View MSA
122793813 5272 Eudicot View MSA
122045601 5273 Angiosperm View MSA
121344655 5274 Embryophyte View MSA
123424278 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.324        
cufflinks 0.205        
cufflinks 0.266        
cufflinks 0.108        
cufflinks 0.253        
cufflinks 0.013     Low Low
cufflinks 0.4        
cufflinks 0.231        
cufflinks 0.365        

0 Strain