Gene : Medtr3g088450 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR33149:SF4 - PHOTOSYSTEM Q(B) PROTEIN Description:  photosystem II reaction center protein
Genomic Order:  4677 Name:  ? Medtr3g088450
Secondary Identifier:  ? PAC:31053573
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g088450 0.5kb upstream 0.5kb upstream 936 true chr3: 40132431-40133366 Medicago truncatula
Medtr3g088450 0.5kb upstream 0.5kb upstream 500 false chr3: 40132431-40132930 Medicago truncatula
Medtr3g088450 0.5kb downstream 0.5kb downstream 936 true chr3: 40132931-40133866 Medicago truncatula
Medtr3g088450 0.5kb downstream 0.5kb downstream 500 false chr3: 40133367-40133866 Medicago truncatula
Medtr3g088450 1.0kb upstream 1.0kb upstream 1436 true chr3: 40131931-40133366 Medicago truncatula
Medtr3g088450 1.0kb upstream 1.0kb upstream 1000 false chr3: 40131931-40132930 Medicago truncatula
Medtr3g088450 1.0kb downstream 1.0kb downstream 1436 true chr3: 40132931-40134366 Medicago truncatula
Medtr3g088450 1.0kb downstream 1.0kb downstream 1000 false chr3: 40133367-40134366 Medicago truncatula
Medtr3g088450 2.0kb upstream 2.0kb upstream 2436 true chr3: 40130931-40133366 Medicago truncatula
Medtr3g088450 2.0kb upstream 2.0kb upstream 2000 false chr3: 40130931-40132930 Medicago truncatula
Medtr3g088450 2.0kb downstream 2.0kb downstream 2436 true chr3: 40132931-40135366 Medicago truncatula
Medtr3g088450 2.0kb downstream 2.0kb downstream 2000 false chr3: 40133367-40135366 Medicago truncatula
Medtr3g088450 5.0kb upstream 5.0kb upstream 5436 true chr3: 40127931-40133366 Medicago truncatula
Medtr3g088450 5.0kb upstream 5.0kb upstream 5000 false chr3: 40127931-40132930 Medicago truncatula
Medtr3g088450 5.0kb downstream 5.0kb downstream 5436 true chr3: 40132931-40138366 Medicago truncatula
Medtr3g088450 5.0kb downstream 5.0kb downstream 5000 false chr3: 40133367-40138366 Medicago truncatula
Medtr3g088450 10.0kb upstream 10.0kb upstream 10436 true chr3: 40122931-40133366 Medicago truncatula
Medtr3g088450 10.0kb upstream 10.0kb upstream 10000 false chr3: 40122931-40132930 Medicago truncatula
Medtr3g088450 10.0kb downstream 10.0kb downstream 10436 true chr3: 40132931-40143366 Medicago truncatula
Medtr3g088450 10.0kb downstream 10.0kb downstream 10000 false chr3: 40133367-40143366 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122259302 5265 Fabidae Singleton cluster - no MSA
124040377 5270 Rosid View MSA
123751275 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain