Gene : Medtr3g088060 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13439:SF4 - PROTEIN K12H6.6, ISOFORM B-RELATED Description:  TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein
Genomic Order:  4649 Name:  ? Medtr3g088060
Secondary Identifier:  ? PAC:31054416
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g088060 0.5kb upstream 0.5kb upstream 3539 true chr3: 39919131-39922669 Medicago truncatula
Medtr3g088060 0.5kb upstream 0.5kb upstream 500 false chr3: 39922170-39922669 Medicago truncatula
Medtr3g088060 0.5kb downstream 0.5kb downstream 3539 true chr3: 39918631-39922169 Medicago truncatula
Medtr3g088060 0.5kb downstream 0.5kb downstream 500 false chr3: 39918631-39919130 Medicago truncatula
Medtr3g088060 1.0kb upstream 1.0kb upstream 4039 true chr3: 39919131-39923169 Medicago truncatula
Medtr3g088060 1.0kb upstream 1.0kb upstream 1000 false chr3: 39922170-39923169 Medicago truncatula
Medtr3g088060 1.0kb downstream 1.0kb downstream 4039 true chr3: 39918131-39922169 Medicago truncatula
Medtr3g088060 1.0kb downstream 1.0kb downstream 1000 false chr3: 39918131-39919130 Medicago truncatula
Medtr3g088060 2.0kb upstream 2.0kb upstream 5039 true chr3: 39919131-39924169 Medicago truncatula
Medtr3g088060 2.0kb upstream 2.0kb upstream 2000 false chr3: 39922170-39924169 Medicago truncatula
Medtr3g088060 2.0kb downstream 2.0kb downstream 5039 true chr3: 39917131-39922169 Medicago truncatula
Medtr3g088060 2.0kb downstream 2.0kb downstream 2000 false chr3: 39917131-39919130 Medicago truncatula
Medtr3g088060 5.0kb upstream 5.0kb upstream 8039 true chr3: 39919131-39927169 Medicago truncatula
Medtr3g088060 5.0kb upstream 5.0kb upstream 5000 false chr3: 39922170-39927169 Medicago truncatula
Medtr3g088060 5.0kb downstream 5.0kb downstream 8039 true chr3: 39914131-39922169 Medicago truncatula
Medtr3g088060 5.0kb downstream 5.0kb downstream 5000 false chr3: 39914131-39919130 Medicago truncatula
Medtr3g088060 10.0kb upstream 10.0kb upstream 13039 true chr3: 39919131-39932169 Medicago truncatula
Medtr3g088060 10.0kb upstream 10.0kb upstream 10000 false chr3: 39922170-39932169 Medicago truncatula
Medtr3g088060 10.0kb downstream 10.0kb downstream 13039 true chr3: 39909131-39922169 Medicago truncatula
Medtr3g088060 10.0kb downstream 10.0kb downstream 10000 false chr3: 39909131-39919130 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307378 5265 Fabidae View MSA
124060547 5270 Rosid View MSA
123746967 5271 Pentapetalae View MSA
122786195 5272 Eudicot View MSA
122046296 5273 Angiosperm View MSA
121344008 5274 Embryophyte View MSA
123379957 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.071        
cufflinks 4.975       Low
cufflinks 6.189        
cufflinks 8.295       High
cufflinks 5.108        
cufflinks 5.669        
cufflinks 8.896       High
cufflinks 4.612       Low
cufflinks 8.05        

0 Strain