Gene : Medtr3g088080 M. truncatula Mt4.0v1
Defline:  (1 of 53) PTHR22763 - RING ZINC FINGER PROTEIN Description:  zinc finger, C3HC4 type (RING finger) protein
Genomic Order:  4650 Name:  ? Medtr3g088080
Secondary Identifier:  ? PAC:31061534
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g088080 0.5kb upstream 0.5kb upstream 767 true chr3: 39929802-39930568 Medicago truncatula
Medtr3g088080 0.5kb upstream 0.5kb upstream 500 false chr3: 39930069-39930568 Medicago truncatula
Medtr3g088080 0.5kb downstream 0.5kb downstream 767 true chr3: 39929302-39930068 Medicago truncatula
Medtr3g088080 0.5kb downstream 0.5kb downstream 500 false chr3: 39929302-39929801 Medicago truncatula
Medtr3g088080 1.0kb upstream 1.0kb upstream 1267 true chr3: 39929802-39931068 Medicago truncatula
Medtr3g088080 1.0kb upstream 1.0kb upstream 1000 false chr3: 39930069-39931068 Medicago truncatula
Medtr3g088080 1.0kb downstream 1.0kb downstream 1267 true chr3: 39928802-39930068 Medicago truncatula
Medtr3g088080 1.0kb downstream 1.0kb downstream 1000 false chr3: 39928802-39929801 Medicago truncatula
Medtr3g088080 2.0kb upstream 2.0kb upstream 2267 true chr3: 39929802-39932068 Medicago truncatula
Medtr3g088080 2.0kb upstream 2.0kb upstream 2000 false chr3: 39930069-39932068 Medicago truncatula
Medtr3g088080 2.0kb downstream 2.0kb downstream 2267 true chr3: 39927802-39930068 Medicago truncatula
Medtr3g088080 2.0kb downstream 2.0kb downstream 2000 false chr3: 39927802-39929801 Medicago truncatula
Medtr3g088080 5.0kb upstream 5.0kb upstream 5267 true chr3: 39929802-39935068 Medicago truncatula
Medtr3g088080 5.0kb upstream 5.0kb upstream 5000 false chr3: 39930069-39935068 Medicago truncatula
Medtr3g088080 5.0kb downstream 5.0kb downstream 5267 true chr3: 39924802-39930068 Medicago truncatula
Medtr3g088080 5.0kb downstream 5.0kb downstream 5000 false chr3: 39924802-39929801 Medicago truncatula
Medtr3g088080 10.0kb upstream 10.0kb upstream 10267 true chr3: 39929802-39940068 Medicago truncatula
Medtr3g088080 10.0kb upstream 10.0kb upstream 10000 false chr3: 39930069-39940068 Medicago truncatula
Medtr3g088080 10.0kb downstream 10.0kb downstream 10267 true chr3: 39919802-39930068 Medicago truncatula
Medtr3g088080 10.0kb downstream 10.0kb downstream 10000 false chr3: 39919802-39929801 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313843 5265 Fabidae View MSA
124074559 5270 Rosid View MSA
123753748 5271 Pentapetalae View MSA
122797850 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain