Gene : Medtr3g005510 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN Description:  regulator of nonsense transcripts UPF3 protein
Genomic Order:  34 Name:  ? Medtr3g005510
Secondary Identifier:  ? PAC:31057282
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g005510 0.5kb upstream 0.5kb upstream 8528 true chr3: 230542-239069 Medicago truncatula
Medtr3g005510 0.5kb upstream 0.5kb upstream 500 false chr3: 238570-239069 Medicago truncatula
Medtr3g005510 0.5kb downstream 0.5kb downstream 8528 true chr3: 230042-238569 Medicago truncatula
Medtr3g005510 0.5kb downstream 0.5kb downstream 500 false chr3: 230042-230541 Medicago truncatula
Medtr3g005510 1.0kb upstream 1.0kb upstream 9028 true chr3: 230542-239569 Medicago truncatula
Medtr3g005510 1.0kb upstream 1.0kb upstream 1000 false chr3: 238570-239569 Medicago truncatula
Medtr3g005510 1.0kb downstream 1.0kb downstream 9028 true chr3: 229542-238569 Medicago truncatula
Medtr3g005510 1.0kb downstream 1.0kb downstream 1000 false chr3: 229542-230541 Medicago truncatula
Medtr3g005510 2.0kb upstream 2.0kb upstream 10028 true chr3: 230542-240569 Medicago truncatula
Medtr3g005510 2.0kb upstream 2.0kb upstream 2000 false chr3: 238570-240569 Medicago truncatula
Medtr3g005510 2.0kb downstream 2.0kb downstream 10028 true chr3: 228542-238569 Medicago truncatula
Medtr3g005510 2.0kb downstream 2.0kb downstream 2000 false chr3: 228542-230541 Medicago truncatula
Medtr3g005510 5.0kb upstream 5.0kb upstream 13028 true chr3: 230542-243569 Medicago truncatula
Medtr3g005510 5.0kb upstream 5.0kb upstream 5000 false chr3: 238570-243569 Medicago truncatula
Medtr3g005510 5.0kb downstream 5.0kb downstream 13028 true chr3: 225542-238569 Medicago truncatula
Medtr3g005510 5.0kb downstream 5.0kb downstream 5000 false chr3: 225542-230541 Medicago truncatula
Medtr3g005510 10.0kb upstream 10.0kb upstream 18028 true chr3: 230542-248569 Medicago truncatula
Medtr3g005510 10.0kb upstream 10.0kb upstream 10000 false chr3: 238570-248569 Medicago truncatula
Medtr3g005510 10.0kb downstream 10.0kb downstream 18028 true chr3: 220542-238569 Medicago truncatula
Medtr3g005510 10.0kb downstream 10.0kb downstream 10000 false chr3: 220542-230541 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041498 5273 Angiosperm View MSA
122307541 5265 Fabidae View MSA
124070961 5270 Rosid View MSA
123750498 5271 Pentapetalae View MSA
122788511 5272 Eudicot View MSA
121351189 5274 Embryophyte View MSA
123425600 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.012       High
cufflinks 2.412        
cufflinks 2.446        
cufflinks 1.454       Low
cufflinks 2.43        
cufflinks 1.572       Low
cufflinks 3.45       High
cufflinks 2.335        
cufflinks 2.465        

0 Strain