Gene : Medtr3g005450 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR11831//PTHR11831:SF13 - 30S 40S RIBOSOMAL PROTEIN Description:  40S ribosomal S9-like protein
Genomic Order:  28 Name:  ? Medtr3g005450
Secondary Identifier:  ? PAC:31057900
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g005450 0.5kb upstream 0.5kb upstream 2665 true chr3: 206191-208855 Medicago truncatula
Medtr3g005450 0.5kb upstream 0.5kb upstream 500 false chr3: 208356-208855 Medicago truncatula
Medtr3g005450 0.5kb downstream 0.5kb downstream 2665 true chr3: 205691-208355 Medicago truncatula
Medtr3g005450 0.5kb downstream 0.5kb downstream 500 false chr3: 205691-206190 Medicago truncatula
Medtr3g005450 1.0kb upstream 1.0kb upstream 3165 true chr3: 206191-209355 Medicago truncatula
Medtr3g005450 1.0kb upstream 1.0kb upstream 1000 false chr3: 208356-209355 Medicago truncatula
Medtr3g005450 1.0kb downstream 1.0kb downstream 3165 true chr3: 205191-208355 Medicago truncatula
Medtr3g005450 1.0kb downstream 1.0kb downstream 1000 false chr3: 205191-206190 Medicago truncatula
Medtr3g005450 2.0kb upstream 2.0kb upstream 4165 true chr3: 206191-210355 Medicago truncatula
Medtr3g005450 2.0kb upstream 2.0kb upstream 2000 false chr3: 208356-210355 Medicago truncatula
Medtr3g005450 2.0kb downstream 2.0kb downstream 4165 true chr3: 204191-208355 Medicago truncatula
Medtr3g005450 2.0kb downstream 2.0kb downstream 2000 false chr3: 204191-206190 Medicago truncatula
Medtr3g005450 5.0kb upstream 5.0kb upstream 7165 true chr3: 206191-213355 Medicago truncatula
Medtr3g005450 5.0kb upstream 5.0kb upstream 5000 false chr3: 208356-213355 Medicago truncatula
Medtr3g005450 5.0kb downstream 5.0kb downstream 7165 true chr3: 201191-208355 Medicago truncatula
Medtr3g005450 5.0kb downstream 5.0kb downstream 5000 false chr3: 201191-206190 Medicago truncatula
Medtr3g005450 10.0kb upstream 10.0kb upstream 12165 true chr3: 206191-218355 Medicago truncatula
Medtr3g005450 10.0kb upstream 10.0kb upstream 10000 false chr3: 208356-218355 Medicago truncatula
Medtr3g005450 10.0kb downstream 10.0kb downstream 12165 true chr3: 196191-208355 Medicago truncatula
Medtr3g005450 10.0kb downstream 10.0kb downstream 10000 false chr3: 196191-206190 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301717 5265 Fabidae View MSA
124071399 5270 Rosid View MSA
123748066 5271 Pentapetalae View MSA
122790013 5272 Eudicot View MSA
122042868 5273 Angiosperm View MSA
121345250 5274 Embryophyte View MSA
123426931 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 79.984     High  
cufflinks 42.338     High Low
cufflinks 49.494     High  
cufflinks 319.42     High High
cufflinks 64.306     High  
cufflinks 241.752     High High
cufflinks 126.108     High  
cufflinks 56.168     High  
cufflinks 180.805     High  

0 Strain