Gene : Medtr2g102730 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR32370:SF16 - NON-PHOTOTROPIC HYPOCOTYL-LIKE PROTEIN Description:  phototropic-responsive NPH3 family protein
Genomic Order:  5653 Name:  ? Medtr2g102730
Secondary Identifier:  ? PAC:31067429
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g102730 0.5kb upstream 0.5kb upstream 3079 true chr2: 44263472-44266550 Medicago truncatula
Medtr2g102730 0.5kb upstream 0.5kb upstream 500 false chr2: 44266051-44266550 Medicago truncatula
Medtr2g102730 0.5kb downstream 0.5kb downstream 3079 true chr2: 44262972-44266050 Medicago truncatula
Medtr2g102730 0.5kb downstream 0.5kb downstream 500 false chr2: 44262972-44263471 Medicago truncatula
Medtr2g102730 1.0kb upstream 1.0kb upstream 3579 true chr2: 44263472-44267050 Medicago truncatula
Medtr2g102730 1.0kb upstream 1.0kb upstream 1000 false chr2: 44266051-44267050 Medicago truncatula
Medtr2g102730 1.0kb downstream 1.0kb downstream 3579 true chr2: 44262472-44266050 Medicago truncatula
Medtr2g102730 1.0kb downstream 1.0kb downstream 1000 false chr2: 44262472-44263471 Medicago truncatula
Medtr2g102730 2.0kb upstream 2.0kb upstream 4579 true chr2: 44263472-44268050 Medicago truncatula
Medtr2g102730 2.0kb upstream 2.0kb upstream 2000 false chr2: 44266051-44268050 Medicago truncatula
Medtr2g102730 2.0kb downstream 2.0kb downstream 4579 true chr2: 44261472-44266050 Medicago truncatula
Medtr2g102730 2.0kb downstream 2.0kb downstream 2000 false chr2: 44261472-44263471 Medicago truncatula
Medtr2g102730 5.0kb upstream 5.0kb upstream 7579 true chr2: 44263472-44271050 Medicago truncatula
Medtr2g102730 5.0kb upstream 5.0kb upstream 5000 false chr2: 44266051-44271050 Medicago truncatula
Medtr2g102730 5.0kb downstream 5.0kb downstream 7579 true chr2: 44258472-44266050 Medicago truncatula
Medtr2g102730 5.0kb downstream 5.0kb downstream 5000 false chr2: 44258472-44263471 Medicago truncatula
Medtr2g102730 10.0kb upstream 10.0kb upstream 12579 true chr2: 44263472-44276050 Medicago truncatula
Medtr2g102730 10.0kb upstream 10.0kb upstream 10000 false chr2: 44266051-44276050 Medicago truncatula
Medtr2g102730 10.0kb downstream 10.0kb downstream 12579 true chr2: 44253472-44266050 Medicago truncatula
Medtr2g102730 10.0kb downstream 10.0kb downstream 10000 false chr2: 44253472-44263471 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313686 5265 Fabidae View MSA
124065820 5270 Rosid View MSA
123742198 5271 Pentapetalae View MSA
122787661 5272 Eudicot View MSA
122051145 5273 Angiosperm View MSA
121347829 5274 Embryophyte View MSA
123380647 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.543        
cufflinks 14.97     High  
cufflinks 10.109     High  
cufflinks 0.018     Low Low
cufflinks 4.418        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.227        
cufflinks 19.63     High  
cufflinks 0.077     Low Low

0 Strain