Gene : Medtr2g103650 M. truncatula Mt4.0v1
Defline:  (1 of 93) 3.2.1.15 - Polygalacturonase / Pectinase Description:  polygalacturonase/glycoside hydrolase family protein
Genomic Order:  5707 Name:  ? Medtr2g103650
Secondary Identifier:  ? PAC:31065993
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g103650 0.5kb upstream 0.5kb upstream 4299 true chr2: 44625414-44629712 Medicago truncatula
Medtr2g103650 0.5kb upstream 0.5kb upstream 500 false chr2: 44629213-44629712 Medicago truncatula
Medtr2g103650 0.5kb downstream 0.5kb downstream 4299 true chr2: 44624914-44629212 Medicago truncatula
Medtr2g103650 0.5kb downstream 0.5kb downstream 500 false chr2: 44624914-44625413 Medicago truncatula
Medtr2g103650 1.0kb upstream 1.0kb upstream 4799 true chr2: 44625414-44630212 Medicago truncatula
Medtr2g103650 1.0kb upstream 1.0kb upstream 1000 false chr2: 44629213-44630212 Medicago truncatula
Medtr2g103650 1.0kb downstream 1.0kb downstream 4799 true chr2: 44624414-44629212 Medicago truncatula
Medtr2g103650 1.0kb downstream 1.0kb downstream 1000 false chr2: 44624414-44625413 Medicago truncatula
Medtr2g103650 2.0kb upstream 2.0kb upstream 5799 true chr2: 44625414-44631212 Medicago truncatula
Medtr2g103650 2.0kb upstream 2.0kb upstream 2000 false chr2: 44629213-44631212 Medicago truncatula
Medtr2g103650 2.0kb downstream 2.0kb downstream 5799 true chr2: 44623414-44629212 Medicago truncatula
Medtr2g103650 2.0kb downstream 2.0kb downstream 2000 false chr2: 44623414-44625413 Medicago truncatula
Medtr2g103650 5.0kb upstream 5.0kb upstream 8799 true chr2: 44625414-44634212 Medicago truncatula
Medtr2g103650 5.0kb upstream 5.0kb upstream 5000 false chr2: 44629213-44634212 Medicago truncatula
Medtr2g103650 5.0kb downstream 5.0kb downstream 8799 true chr2: 44620414-44629212 Medicago truncatula
Medtr2g103650 5.0kb downstream 5.0kb downstream 5000 false chr2: 44620414-44625413 Medicago truncatula
Medtr2g103650 10.0kb upstream 10.0kb upstream 13799 true chr2: 44625414-44639212 Medicago truncatula
Medtr2g103650 10.0kb upstream 10.0kb upstream 10000 false chr2: 44629213-44639212 Medicago truncatula
Medtr2g103650 10.0kb downstream 10.0kb downstream 13799 true chr2: 44615414-44629212 Medicago truncatula
Medtr2g103650 10.0kb downstream 10.0kb downstream 10000 false chr2: 44615414-44625413 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314178 5265 Fabidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low Low
cufflinks 0.019     Low Low
cufflinks 0.244        
cufflinks 0.05     Low  
cufflinks 0.551        
cufflinks 0.926        
cufflinks 0.025     Low  
cufflinks 2.711       High

0 Strain