Gene : Medtr2g436100 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR14155:SF117 - E3 UBIQUITIN-PROTEIN LIGASE ATL41-RELATED Description:  RING-H2 zinc finger protein
Genomic Order:  1945 Name:  ? Medtr2g436100
Secondary Identifier:  ? PAC:31068981
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g436100 0.5kb upstream 0.5kb upstream 2077 true chr2: 13998012-14000088 Medicago truncatula
Medtr2g436100 0.5kb upstream 0.5kb upstream 500 false chr2: 13999589-14000088 Medicago truncatula
Medtr2g436100 0.5kb downstream 0.5kb downstream 2077 true chr2: 13997512-13999588 Medicago truncatula
Medtr2g436100 0.5kb downstream 0.5kb downstream 500 false chr2: 13997512-13998011 Medicago truncatula
Medtr2g436100 1.0kb upstream 1.0kb upstream 2577 true chr2: 13998012-14000588 Medicago truncatula
Medtr2g436100 1.0kb upstream 1.0kb upstream 1000 false chr2: 13999589-14000588 Medicago truncatula
Medtr2g436100 1.0kb downstream 1.0kb downstream 2577 true chr2: 13997012-13999588 Medicago truncatula
Medtr2g436100 1.0kb downstream 1.0kb downstream 1000 false chr2: 13997012-13998011 Medicago truncatula
Medtr2g436100 2.0kb upstream 2.0kb upstream 3577 true chr2: 13998012-14001588 Medicago truncatula
Medtr2g436100 2.0kb upstream 2.0kb upstream 2000 false chr2: 13999589-14001588 Medicago truncatula
Medtr2g436100 2.0kb downstream 2.0kb downstream 3577 true chr2: 13996012-13999588 Medicago truncatula
Medtr2g436100 2.0kb downstream 2.0kb downstream 2000 false chr2: 13996012-13998011 Medicago truncatula
Medtr2g436100 5.0kb upstream 5.0kb upstream 6577 true chr2: 13998012-14004588 Medicago truncatula
Medtr2g436100 5.0kb upstream 5.0kb upstream 5000 false chr2: 13999589-14004588 Medicago truncatula
Medtr2g436100 5.0kb downstream 5.0kb downstream 6577 true chr2: 13993012-13999588 Medicago truncatula
Medtr2g436100 5.0kb downstream 5.0kb downstream 5000 false chr2: 13993012-13998011 Medicago truncatula
Medtr2g436100 10.0kb upstream 10.0kb upstream 11577 true chr2: 13998012-14009588 Medicago truncatula
Medtr2g436100 10.0kb upstream 10.0kb upstream 10000 false chr2: 13999589-14009588 Medicago truncatula
Medtr2g436100 10.0kb downstream 10.0kb downstream 11577 true chr2: 13988012-13999588 Medicago truncatula
Medtr2g436100 10.0kb downstream 10.0kb downstream 10000 false chr2: 13988012-13998011 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306119 5265 Fabidae View MSA
124069328 5270 Rosid View MSA
123753111 5271 Pentapetalae View MSA
122797850 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.306     High  
cufflinks 22.136     High Low
cufflinks 31.079     High  
cufflinks 88.923     High High
cufflinks 31.648     High  
cufflinks 54.766     High  
cufflinks 33.732     High  
cufflinks 23.739     High Low
cufflinks 60.071     High  

0 Strain