Gene : Medtr2g101120 M. truncatula Mt4.0v1
Defline:  (1 of 50) PF05553 - Cotton fibre expressed protein (DUF761) Description:  Avr9/Cf-9 rapidly elicited protein
Genomic Order:  5533 Name:  ? Medtr2g101120
Secondary Identifier:  ? PAC:31062289
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g101120 0.5kb upstream 0.5kb upstream 1448 true chr2: 43474839-43476286 Medicago truncatula
Medtr2g101120 0.5kb upstream 0.5kb upstream 500 false chr2: 43475787-43476286 Medicago truncatula
Medtr2g101120 0.5kb downstream 0.5kb downstream 1448 true chr2: 43474339-43475786 Medicago truncatula
Medtr2g101120 0.5kb downstream 0.5kb downstream 500 false chr2: 43474339-43474838 Medicago truncatula
Medtr2g101120 1.0kb upstream 1.0kb upstream 1948 true chr2: 43474839-43476786 Medicago truncatula
Medtr2g101120 1.0kb upstream 1.0kb upstream 1000 false chr2: 43475787-43476786 Medicago truncatula
Medtr2g101120 1.0kb downstream 1.0kb downstream 1948 true chr2: 43473839-43475786 Medicago truncatula
Medtr2g101120 1.0kb downstream 1.0kb downstream 1000 false chr2: 43473839-43474838 Medicago truncatula
Medtr2g101120 2.0kb upstream 2.0kb upstream 2948 true chr2: 43474839-43477786 Medicago truncatula
Medtr2g101120 2.0kb upstream 2.0kb upstream 2000 false chr2: 43475787-43477786 Medicago truncatula
Medtr2g101120 2.0kb downstream 2.0kb downstream 2948 true chr2: 43472839-43475786 Medicago truncatula
Medtr2g101120 2.0kb downstream 2.0kb downstream 2000 false chr2: 43472839-43474838 Medicago truncatula
Medtr2g101120 5.0kb upstream 5.0kb upstream 5948 true chr2: 43474839-43480786 Medicago truncatula
Medtr2g101120 5.0kb upstream 5.0kb upstream 5000 false chr2: 43475787-43480786 Medicago truncatula
Medtr2g101120 5.0kb downstream 5.0kb downstream 5948 true chr2: 43469839-43475786 Medicago truncatula
Medtr2g101120 5.0kb downstream 5.0kb downstream 5000 false chr2: 43469839-43474838 Medicago truncatula
Medtr2g101120 10.0kb upstream 10.0kb upstream 10948 true chr2: 43474839-43485786 Medicago truncatula
Medtr2g101120 10.0kb upstream 10.0kb upstream 10000 false chr2: 43475787-43485786 Medicago truncatula
Medtr2g101120 10.0kb downstream 10.0kb downstream 10948 true chr2: 43464839-43475786 Medicago truncatula
Medtr2g101120 10.0kb downstream 10.0kb downstream 10000 false chr2: 43464839-43474838 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305688 5265 Fabidae View MSA
124070746 5270 Rosid View MSA
123749628 5271 Pentapetalae View MSA
122795982 5272 Eudicot View MSA
122049050 5273 Angiosperm View MSA
121311224 5274 Embryophyte View MSA
123348548 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.148        
cufflinks 4.367        
cufflinks 5.839        
cufflinks 9.683     High High
cufflinks 2.357       Low
cufflinks 8.533        
cufflinks 5.727        
cufflinks 7.311        
cufflinks 5.88        

0 Strain