Gene : Medtr2g090885 M. truncatula Mt4.0v1
Defline:  (1 of 599) PF13041 - PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  4941 Name:  ? Medtr2g090885
Secondary Identifier:  ? PAC:31066297
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g090885 0.5kb upstream 0.5kb upstream 4179 true chr2: 39016432-39020610 Medicago truncatula
Medtr2g090885 0.5kb upstream 0.5kb upstream 500 false chr2: 39016432-39016931 Medicago truncatula
Medtr2g090885 0.5kb downstream 0.5kb downstream 4179 true chr2: 39016932-39021110 Medicago truncatula
Medtr2g090885 0.5kb downstream 0.5kb downstream 500 false chr2: 39020611-39021110 Medicago truncatula
Medtr2g090885 1.0kb upstream 1.0kb upstream 4679 true chr2: 39015932-39020610 Medicago truncatula
Medtr2g090885 1.0kb upstream 1.0kb upstream 1000 false chr2: 39015932-39016931 Medicago truncatula
Medtr2g090885 1.0kb downstream 1.0kb downstream 4679 true chr2: 39016932-39021610 Medicago truncatula
Medtr2g090885 1.0kb downstream 1.0kb downstream 1000 false chr2: 39020611-39021610 Medicago truncatula
Medtr2g090885 2.0kb upstream 2.0kb upstream 5679 true chr2: 39014932-39020610 Medicago truncatula
Medtr2g090885 2.0kb upstream 2.0kb upstream 2000 false chr2: 39014932-39016931 Medicago truncatula
Medtr2g090885 2.0kb downstream 2.0kb downstream 5679 true chr2: 39016932-39022610 Medicago truncatula
Medtr2g090885 2.0kb downstream 2.0kb downstream 2000 false chr2: 39020611-39022610 Medicago truncatula
Medtr2g090885 5.0kb upstream 5.0kb upstream 8679 true chr2: 39011932-39020610 Medicago truncatula
Medtr2g090885 5.0kb upstream 5.0kb upstream 5000 false chr2: 39011932-39016931 Medicago truncatula
Medtr2g090885 5.0kb downstream 5.0kb downstream 8679 true chr2: 39016932-39025610 Medicago truncatula
Medtr2g090885 5.0kb downstream 5.0kb downstream 5000 false chr2: 39020611-39025610 Medicago truncatula
Medtr2g090885 10.0kb upstream 10.0kb upstream 13679 true chr2: 39006932-39020610 Medicago truncatula
Medtr2g090885 10.0kb upstream 10.0kb upstream 10000 false chr2: 39006932-39016931 Medicago truncatula
Medtr2g090885 10.0kb downstream 10.0kb downstream 13679 true chr2: 39016932-39030610 Medicago truncatula
Medtr2g090885 10.0kb downstream 10.0kb downstream 10000 false chr2: 39020611-39030610 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791718 5273 Angiosperm View MSA
122300613 5265 Fabidae View MSA
124062312 5270 Rosid View MSA
123736889 5271 Pentapetalae View MSA
122787074 5272 Eudicot View MSA
121063019 5274 Embryophyte View MSA
123102806 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.668        
cufflinks 0.505        
cufflinks 0.816       High
cufflinks 0.204       Low
cufflinks 0.986       High
cufflinks 0.22        
cufflinks 0.299        
cufflinks 0.59        
cufflinks 0.167       Low

0 Strain