Gene : Medtr2g092950 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Description:  DUF640 family protein
Genomic Order:  5012 Name:  ? Medtr2g092950
Secondary Identifier:  ? PAC:31062931
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g092950 0.5kb upstream 0.5kb upstream 4879 true chr2: 39555636-39560514 Medicago truncatula
Medtr2g092950 0.5kb upstream 0.5kb upstream 500 false chr2: 39555636-39556135 Medicago truncatula
Medtr2g092950 0.5kb downstream 0.5kb downstream 4879 true chr2: 39556136-39561014 Medicago truncatula
Medtr2g092950 0.5kb downstream 0.5kb downstream 500 false chr2: 39560515-39561014 Medicago truncatula
Medtr2g092950 1.0kb upstream 1.0kb upstream 5379 true chr2: 39555136-39560514 Medicago truncatula
Medtr2g092950 1.0kb upstream 1.0kb upstream 1000 false chr2: 39555136-39556135 Medicago truncatula
Medtr2g092950 1.0kb downstream 1.0kb downstream 5379 true chr2: 39556136-39561514 Medicago truncatula
Medtr2g092950 1.0kb downstream 1.0kb downstream 1000 false chr2: 39560515-39561514 Medicago truncatula
Medtr2g092950 2.0kb upstream 2.0kb upstream 6379 true chr2: 39554136-39560514 Medicago truncatula
Medtr2g092950 2.0kb upstream 2.0kb upstream 2000 false chr2: 39554136-39556135 Medicago truncatula
Medtr2g092950 2.0kb downstream 2.0kb downstream 6379 true chr2: 39556136-39562514 Medicago truncatula
Medtr2g092950 2.0kb downstream 2.0kb downstream 2000 false chr2: 39560515-39562514 Medicago truncatula
Medtr2g092950 5.0kb upstream 5.0kb upstream 9379 true chr2: 39551136-39560514 Medicago truncatula
Medtr2g092950 5.0kb upstream 5.0kb upstream 5000 false chr2: 39551136-39556135 Medicago truncatula
Medtr2g092950 5.0kb downstream 5.0kb downstream 9379 true chr2: 39556136-39565514 Medicago truncatula
Medtr2g092950 5.0kb downstream 5.0kb downstream 5000 false chr2: 39560515-39565514 Medicago truncatula
Medtr2g092950 10.0kb upstream 10.0kb upstream 14379 true chr2: 39546136-39560514 Medicago truncatula
Medtr2g092950 10.0kb upstream 10.0kb upstream 10000 false chr2: 39546136-39556135 Medicago truncatula
Medtr2g092950 10.0kb downstream 10.0kb downstream 14379 true chr2: 39556136-39570514 Medicago truncatula
Medtr2g092950 10.0kb downstream 10.0kb downstream 10000 false chr2: 39560515-39570514 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792183 5273 Angiosperm View MSA
122309730 5265 Fabidae View MSA
124064953 5270 Rosid View MSA
123750207 5271 Pentapetalae View MSA
122796804 5272 Eudicot View MSA
121063429 5274 Embryophyte View MSA
123103178 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low  
cufflinks 0.011     Low  
cufflinks 0.022     Low  
cufflinks 0.174        
cufflinks 0.021     Low  
cufflinks 0.209        
cufflinks 0.166        
cufflinks 0.003     Low Low
cufflinks 0.316       High

0 Strain