Gene : Medtr3g045420 M. truncatula Mt4.0v1
Defline:  (1 of 210) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  1648 Name:  ? Medtr3g045420
Secondary Identifier:  ? PAC:31058928
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g045420 0.5kb upstream 0.5kb upstream 4779 true chr3: 14772631-14777409 Medicago truncatula
Medtr3g045420 0.5kb upstream 0.5kb upstream 500 false chr3: 14772631-14773130 Medicago truncatula
Medtr3g045420 0.5kb downstream 0.5kb downstream 4779 true chr3: 14773131-14777909 Medicago truncatula
Medtr3g045420 0.5kb downstream 0.5kb downstream 500 false chr3: 14777410-14777909 Medicago truncatula
Medtr3g045420 1.0kb upstream 1.0kb upstream 5279 true chr3: 14772131-14777409 Medicago truncatula
Medtr3g045420 1.0kb upstream 1.0kb upstream 1000 false chr3: 14772131-14773130 Medicago truncatula
Medtr3g045420 1.0kb downstream 1.0kb downstream 5279 true chr3: 14773131-14778409 Medicago truncatula
Medtr3g045420 1.0kb downstream 1.0kb downstream 1000 false chr3: 14777410-14778409 Medicago truncatula
Medtr3g045420 2.0kb upstream 2.0kb upstream 6279 true chr3: 14771131-14777409 Medicago truncatula
Medtr3g045420 2.0kb upstream 2.0kb upstream 2000 false chr3: 14771131-14773130 Medicago truncatula
Medtr3g045420 2.0kb downstream 2.0kb downstream 6279 true chr3: 14773131-14779409 Medicago truncatula
Medtr3g045420 2.0kb downstream 2.0kb downstream 2000 false chr3: 14777410-14779409 Medicago truncatula
Medtr3g045420 5.0kb upstream 5.0kb upstream 9279 true chr3: 14768131-14777409 Medicago truncatula
Medtr3g045420 5.0kb upstream 5.0kb upstream 5000 false chr3: 14768131-14773130 Medicago truncatula
Medtr3g045420 5.0kb downstream 5.0kb downstream 9279 true chr3: 14773131-14782409 Medicago truncatula
Medtr3g045420 5.0kb downstream 5.0kb downstream 5000 false chr3: 14777410-14782409 Medicago truncatula
Medtr3g045420 10.0kb upstream 10.0kb upstream 14279 true chr3: 14763131-14777409 Medicago truncatula
Medtr3g045420 10.0kb upstream 10.0kb upstream 10000 false chr3: 14763131-14773130 Medicago truncatula
Medtr3g045420 10.0kb downstream 10.0kb downstream 14279 true chr3: 14773131-14787409 Medicago truncatula
Medtr3g045420 10.0kb downstream 10.0kb downstream 10000 false chr3: 14777410-14787409 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303386 5265 Fabidae View MSA
124066157 5270 Rosid View MSA
123739123 5271 Pentapetalae View MSA
122794218 5272 Eudicot View MSA
122042407 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350963 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.014        
cufflinks 3.944        
cufflinks 2.86        
cufflinks 1.805        
cufflinks 7.57       High
cufflinks 0.974       Low
cufflinks 3.026        
cufflinks 3.631        
cufflinks 5.636        

0 Strain