Gene : Medtr3g048940 M. truncatula Mt4.0v1
Defline:  (1 of 6) PF06881 - RNA polymerase II transcription factor SIII (Elongin) subunit A (Elongin_A) Description:  RNA polymerase II transcription factor SIII (elongin) subunit A
Genomic Order:  1896 Name:  ? Medtr3g048940
Secondary Identifier:  ? PAC:31057644
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g048940 0.5kb upstream 0.5kb upstream 3614 true chr3: 18178515-18182128 Medicago truncatula
Medtr3g048940 0.5kb upstream 0.5kb upstream 500 false chr3: 18181629-18182128 Medicago truncatula
Medtr3g048940 0.5kb downstream 0.5kb downstream 3614 true chr3: 18178015-18181628 Medicago truncatula
Medtr3g048940 0.5kb downstream 0.5kb downstream 500 false chr3: 18178015-18178514 Medicago truncatula
Medtr3g048940 1.0kb upstream 1.0kb upstream 4114 true chr3: 18178515-18182628 Medicago truncatula
Medtr3g048940 1.0kb upstream 1.0kb upstream 1000 false chr3: 18181629-18182628 Medicago truncatula
Medtr3g048940 1.0kb downstream 1.0kb downstream 4114 true chr3: 18177515-18181628 Medicago truncatula
Medtr3g048940 1.0kb downstream 1.0kb downstream 1000 false chr3: 18177515-18178514 Medicago truncatula
Medtr3g048940 2.0kb upstream 2.0kb upstream 5114 true chr3: 18178515-18183628 Medicago truncatula
Medtr3g048940 2.0kb upstream 2.0kb upstream 2000 false chr3: 18181629-18183628 Medicago truncatula
Medtr3g048940 2.0kb downstream 2.0kb downstream 5114 true chr3: 18176515-18181628 Medicago truncatula
Medtr3g048940 2.0kb downstream 2.0kb downstream 2000 false chr3: 18176515-18178514 Medicago truncatula
Medtr3g048940 5.0kb upstream 5.0kb upstream 8114 true chr3: 18178515-18186628 Medicago truncatula
Medtr3g048940 5.0kb upstream 5.0kb upstream 5000 false chr3: 18181629-18186628 Medicago truncatula
Medtr3g048940 5.0kb downstream 5.0kb downstream 8114 true chr3: 18173515-18181628 Medicago truncatula
Medtr3g048940 5.0kb downstream 5.0kb downstream 5000 false chr3: 18173515-18178514 Medicago truncatula
Medtr3g048940 10.0kb upstream 10.0kb upstream 13114 true chr3: 18178515-18191628 Medicago truncatula
Medtr3g048940 10.0kb upstream 10.0kb upstream 10000 false chr3: 18181629-18191628 Medicago truncatula
Medtr3g048940 10.0kb downstream 10.0kb downstream 13114 true chr3: 18168515-18181628 Medicago truncatula
Medtr3g048940 10.0kb downstream 10.0kb downstream 10000 false chr3: 18168515-18178514 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305836 5265 Fabidae View MSA
124061122 5270 Rosid View MSA
123737444 5271 Pentapetalae View MSA
122789909 5272 Eudicot View MSA
122045966 5273 Angiosperm View MSA
121349001 5274 Embryophyte View MSA
123425907 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.243        
cufflinks 1.281        
cufflinks 1.941       High
cufflinks 1.082       Low
cufflinks 1.501        
cufflinks 1.044       Low
cufflinks 1.228        
cufflinks 1.389        
cufflinks 1.285        

0 Strain