Gene : Medtr3g048920 M. truncatula Mt4.0v1
Defline:  (1 of 3) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Description:  citrate synthase 3, peroxisomal protein
Genomic Order:  1894 Name:  ? Medtr3g048920
Secondary Identifier:  ? PAC:31061350
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula GLYOXYLATE-BYPASS Medicago truncatula pathologic  
Mtruncatula PWY-5464 Medicago truncatula pathologic  
Mtruncatula PWY-561 Medicago truncatula pathologic  
Mtruncatula PWY-5690 Medicago truncatula pathologic  
Mtruncatula PWY-6549 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g048920 0.5kb upstream 0.5kb upstream 6556 true chr3: 18168848-18175403 Medicago truncatula
Medtr3g048920 0.5kb upstream 0.5kb upstream 500 false chr3: 18168848-18169347 Medicago truncatula
Medtr3g048920 0.5kb downstream 0.5kb downstream 6556 true chr3: 18169348-18175903 Medicago truncatula
Medtr3g048920 0.5kb downstream 0.5kb downstream 500 false chr3: 18175404-18175903 Medicago truncatula
Medtr3g048920 1.0kb upstream 1.0kb upstream 7056 true chr3: 18168348-18175403 Medicago truncatula
Medtr3g048920 1.0kb upstream 1.0kb upstream 1000 false chr3: 18168348-18169347 Medicago truncatula
Medtr3g048920 1.0kb downstream 1.0kb downstream 7056 true chr3: 18169348-18176403 Medicago truncatula
Medtr3g048920 1.0kb downstream 1.0kb downstream 1000 false chr3: 18175404-18176403 Medicago truncatula
Medtr3g048920 2.0kb upstream 2.0kb upstream 8056 true chr3: 18167348-18175403 Medicago truncatula
Medtr3g048920 2.0kb upstream 2.0kb upstream 2000 false chr3: 18167348-18169347 Medicago truncatula
Medtr3g048920 2.0kb downstream 2.0kb downstream 8056 true chr3: 18169348-18177403 Medicago truncatula
Medtr3g048920 2.0kb downstream 2.0kb downstream 2000 false chr3: 18175404-18177403 Medicago truncatula
Medtr3g048920 5.0kb upstream 5.0kb upstream 11056 true chr3: 18164348-18175403 Medicago truncatula
Medtr3g048920 5.0kb upstream 5.0kb upstream 5000 false chr3: 18164348-18169347 Medicago truncatula
Medtr3g048920 5.0kb downstream 5.0kb downstream 11056 true chr3: 18169348-18180403 Medicago truncatula
Medtr3g048920 5.0kb downstream 5.0kb downstream 5000 false chr3: 18175404-18180403 Medicago truncatula
Medtr3g048920 10.0kb upstream 10.0kb upstream 16056 true chr3: 18159348-18175403 Medicago truncatula
Medtr3g048920 10.0kb upstream 10.0kb upstream 10000 false chr3: 18159348-18169347 Medicago truncatula
Medtr3g048920 10.0kb downstream 10.0kb downstream 16056 true chr3: 18169348-18185403 Medicago truncatula
Medtr3g048920 10.0kb downstream 10.0kb downstream 10000 false chr3: 18175404-18185403 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309645 5265 Fabidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.805        
cufflinks 6.073        
cufflinks 8.882       High
cufflinks 8.128        
cufflinks 5.229       Low
cufflinks 5.511       Low
cufflinks 9.37       High
cufflinks 6.402        
cufflinks 7.244        

0 Strain