Gene : Medtr3g048190 M. truncatula Mt4.0v1
Defline:  (1 of 6) 6.1.1.15 - Proline--tRNA ligase / Prolyl-tRNA synthetase Description:  prolyl-tRNA synthetase family protein
Genomic Order:  1737 Name:  ? Medtr3g048190
Secondary Identifier:  ? PAC:31056404
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g048190 0.5kb upstream 0.5kb upstream 7194 true chr3: 16068630-16075823 Medicago truncatula
Medtr3g048190 0.5kb upstream 0.5kb upstream 500 false chr3: 16075324-16075823 Medicago truncatula
Medtr3g048190 0.5kb downstream 0.5kb downstream 7194 true chr3: 16068130-16075323 Medicago truncatula
Medtr3g048190 0.5kb downstream 0.5kb downstream 500 false chr3: 16068130-16068629 Medicago truncatula
Medtr3g048190 1.0kb upstream 1.0kb upstream 7694 true chr3: 16068630-16076323 Medicago truncatula
Medtr3g048190 1.0kb upstream 1.0kb upstream 1000 false chr3: 16075324-16076323 Medicago truncatula
Medtr3g048190 1.0kb downstream 1.0kb downstream 7694 true chr3: 16067630-16075323 Medicago truncatula
Medtr3g048190 1.0kb downstream 1.0kb downstream 1000 false chr3: 16067630-16068629 Medicago truncatula
Medtr3g048190 2.0kb upstream 2.0kb upstream 8694 true chr3: 16068630-16077323 Medicago truncatula
Medtr3g048190 2.0kb upstream 2.0kb upstream 2000 false chr3: 16075324-16077323 Medicago truncatula
Medtr3g048190 2.0kb downstream 2.0kb downstream 8694 true chr3: 16066630-16075323 Medicago truncatula
Medtr3g048190 2.0kb downstream 2.0kb downstream 2000 false chr3: 16066630-16068629 Medicago truncatula
Medtr3g048190 5.0kb upstream 5.0kb upstream 11694 true chr3: 16068630-16080323 Medicago truncatula
Medtr3g048190 5.0kb upstream 5.0kb upstream 5000 false chr3: 16075324-16080323 Medicago truncatula
Medtr3g048190 5.0kb downstream 5.0kb downstream 11694 true chr3: 16063630-16075323 Medicago truncatula
Medtr3g048190 5.0kb downstream 5.0kb downstream 5000 false chr3: 16063630-16068629 Medicago truncatula
Medtr3g048190 10.0kb upstream 10.0kb upstream 16694 true chr3: 16068630-16085323 Medicago truncatula
Medtr3g048190 10.0kb upstream 10.0kb upstream 10000 false chr3: 16075324-16085323 Medicago truncatula
Medtr3g048190 10.0kb downstream 10.0kb downstream 16694 true chr3: 16058630-16075323 Medicago truncatula
Medtr3g048190 10.0kb downstream 10.0kb downstream 10000 false chr3: 16058630-16068629 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296108 5265 Fabidae View MSA
124041821 5270 Rosid View MSA
123755028 5271 Pentapetalae View MSA
122798313 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.227        
cufflinks 2.046        
cufflinks 2.876       High
cufflinks 0.868       Low
cufflinks 2.562        
cufflinks 0.563       Low
cufflinks 1.504        
cufflinks 2.296        
cufflinks 0.991        

0 Strain