Gene : Medtr3g053350 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF02201//PF13041 - SWIB/MDM2 domain (SWIB) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  2174 Name:  ? Medtr3g053350
Secondary Identifier:  ? PAC:31058978
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20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g053350 0.5kb upstream 0.5kb upstream 6447 true chr3: 21205924-21212370 Medicago truncatula
Medtr3g053350 0.5kb upstream 0.5kb upstream 500 false chr3: 21211871-21212370 Medicago truncatula
Medtr3g053350 0.5kb downstream 0.5kb downstream 6447 true chr3: 21205424-21211870 Medicago truncatula
Medtr3g053350 0.5kb downstream 0.5kb downstream 500 false chr3: 21205424-21205923 Medicago truncatula
Medtr3g053350 1.0kb upstream 1.0kb upstream 6947 true chr3: 21205924-21212870 Medicago truncatula
Medtr3g053350 1.0kb upstream 1.0kb upstream 1000 false chr3: 21211871-21212870 Medicago truncatula
Medtr3g053350 1.0kb downstream 1.0kb downstream 6947 true chr3: 21204924-21211870 Medicago truncatula
Medtr3g053350 1.0kb downstream 1.0kb downstream 1000 false chr3: 21204924-21205923 Medicago truncatula
Medtr3g053350 2.0kb upstream 2.0kb upstream 7947 true chr3: 21205924-21213870 Medicago truncatula
Medtr3g053350 2.0kb upstream 2.0kb upstream 2000 false chr3: 21211871-21213870 Medicago truncatula
Medtr3g053350 2.0kb downstream 2.0kb downstream 7947 true chr3: 21203924-21211870 Medicago truncatula
Medtr3g053350 2.0kb downstream 2.0kb downstream 2000 false chr3: 21203924-21205923 Medicago truncatula
Medtr3g053350 5.0kb upstream 5.0kb upstream 10947 true chr3: 21205924-21216870 Medicago truncatula
Medtr3g053350 5.0kb upstream 5.0kb upstream 5000 false chr3: 21211871-21216870 Medicago truncatula
Medtr3g053350 5.0kb downstream 5.0kb downstream 10947 true chr3: 21200924-21211870 Medicago truncatula
Medtr3g053350 5.0kb downstream 5.0kb downstream 5000 false chr3: 21200924-21205923 Medicago truncatula
Medtr3g053350 10.0kb upstream 10.0kb upstream 15947 true chr3: 21205924-21221870 Medicago truncatula
Medtr3g053350 10.0kb upstream 10.0kb upstream 10000 false chr3: 21211871-21221870 Medicago truncatula
Medtr3g053350 10.0kb downstream 10.0kb downstream 15947 true chr3: 21195924-21211870 Medicago truncatula
Medtr3g053350 10.0kb downstream 10.0kb downstream 10000 false chr3: 21195924-21205923 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302032 5265 Fabidae View MSA
124063650 5270 Rosid View MSA
123744413 5271 Pentapetalae View MSA
122789799 5272 Eudicot View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.961        
cufflinks 1.838        
cufflinks 3.623       High
cufflinks 0.649       Low
cufflinks 3.081       High
cufflinks 0.574       Low
cufflinks 1.178        
cufflinks 2.49        
cufflinks 0.699       Low

0 Strain