Gene : Medtr3g053230 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10146 - PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN Description:  proline synthetase associated protein
Genomic Order:  2169 Name:  ? Medtr3g053230
Secondary Identifier:  ? PAC:31056674
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g053230 0.5kb upstream 0.5kb upstream 7157 true chr3: 21142887-21150043 Medicago truncatula
Medtr3g053230 0.5kb upstream 0.5kb upstream 500 false chr3: 21149544-21150043 Medicago truncatula
Medtr3g053230 0.5kb downstream 0.5kb downstream 7157 true chr3: 21142387-21149543 Medicago truncatula
Medtr3g053230 0.5kb downstream 0.5kb downstream 500 false chr3: 21142387-21142886 Medicago truncatula
Medtr3g053230 1.0kb upstream 1.0kb upstream 7657 true chr3: 21142887-21150543 Medicago truncatula
Medtr3g053230 1.0kb upstream 1.0kb upstream 1000 false chr3: 21149544-21150543 Medicago truncatula
Medtr3g053230 1.0kb downstream 1.0kb downstream 7657 true chr3: 21141887-21149543 Medicago truncatula
Medtr3g053230 1.0kb downstream 1.0kb downstream 1000 false chr3: 21141887-21142886 Medicago truncatula
Medtr3g053230 2.0kb upstream 2.0kb upstream 8657 true chr3: 21142887-21151543 Medicago truncatula
Medtr3g053230 2.0kb upstream 2.0kb upstream 2000 false chr3: 21149544-21151543 Medicago truncatula
Medtr3g053230 2.0kb downstream 2.0kb downstream 8657 true chr3: 21140887-21149543 Medicago truncatula
Medtr3g053230 2.0kb downstream 2.0kb downstream 2000 false chr3: 21140887-21142886 Medicago truncatula
Medtr3g053230 5.0kb upstream 5.0kb upstream 11657 true chr3: 21142887-21154543 Medicago truncatula
Medtr3g053230 5.0kb upstream 5.0kb upstream 5000 false chr3: 21149544-21154543 Medicago truncatula
Medtr3g053230 5.0kb downstream 5.0kb downstream 11657 true chr3: 21137887-21149543 Medicago truncatula
Medtr3g053230 5.0kb downstream 5.0kb downstream 5000 false chr3: 21137887-21142886 Medicago truncatula
Medtr3g053230 10.0kb upstream 10.0kb upstream 16657 true chr3: 21142887-21159543 Medicago truncatula
Medtr3g053230 10.0kb upstream 10.0kb upstream 10000 false chr3: 21149544-21159543 Medicago truncatula
Medtr3g053230 10.0kb downstream 10.0kb downstream 16657 true chr3: 21132887-21149543 Medicago truncatula
Medtr3g053230 10.0kb downstream 10.0kb downstream 10000 false chr3: 21132887-21142886 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307915 5265 Fabidae View MSA
124066747 5270 Rosid View MSA
123741353 5271 Pentapetalae View MSA
122795077 5272 Eudicot View MSA
122042316 5273 Angiosperm View MSA
121344237 5274 Embryophyte View MSA
123424021 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.473        
cufflinks 6.974       High
cufflinks 3.951        
cufflinks 1.308        
cufflinks 7.15       High
cufflinks 0.896       Low
cufflinks 1.095        
cufflinks 4.994        
cufflinks 1.38        

0 Strain