Gene : Medtr3g054010 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31963:SF4 - F11F12.5 PROTEIN Description:  extracellular ligand-gated ion channel protein
Genomic Order:  2201 Name:  ? Medtr3g054010
Secondary Identifier:  ? PAC:31056083
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g054010 0.5kb upstream 0.5kb upstream 5348 true chr3: 21415501-21420848 Medicago truncatula
Medtr3g054010 0.5kb upstream 0.5kb upstream 500 false chr3: 21415501-21416000 Medicago truncatula
Medtr3g054010 0.5kb downstream 0.5kb downstream 5348 true chr3: 21416001-21421348 Medicago truncatula
Medtr3g054010 0.5kb downstream 0.5kb downstream 500 false chr3: 21420849-21421348 Medicago truncatula
Medtr3g054010 1.0kb upstream 1.0kb upstream 5848 true chr3: 21415001-21420848 Medicago truncatula
Medtr3g054010 1.0kb upstream 1.0kb upstream 1000 false chr3: 21415001-21416000 Medicago truncatula
Medtr3g054010 1.0kb downstream 1.0kb downstream 5848 true chr3: 21416001-21421848 Medicago truncatula
Medtr3g054010 1.0kb downstream 1.0kb downstream 1000 false chr3: 21420849-21421848 Medicago truncatula
Medtr3g054010 2.0kb upstream 2.0kb upstream 6848 true chr3: 21414001-21420848 Medicago truncatula
Medtr3g054010 2.0kb upstream 2.0kb upstream 2000 false chr3: 21414001-21416000 Medicago truncatula
Medtr3g054010 2.0kb downstream 2.0kb downstream 6848 true chr3: 21416001-21422848 Medicago truncatula
Medtr3g054010 2.0kb downstream 2.0kb downstream 2000 false chr3: 21420849-21422848 Medicago truncatula
Medtr3g054010 5.0kb upstream 5.0kb upstream 9848 true chr3: 21411001-21420848 Medicago truncatula
Medtr3g054010 5.0kb upstream 5.0kb upstream 5000 false chr3: 21411001-21416000 Medicago truncatula
Medtr3g054010 5.0kb downstream 5.0kb downstream 9848 true chr3: 21416001-21425848 Medicago truncatula
Medtr3g054010 5.0kb downstream 5.0kb downstream 5000 false chr3: 21420849-21425848 Medicago truncatula
Medtr3g054010 10.0kb upstream 10.0kb upstream 14848 true chr3: 21406001-21420848 Medicago truncatula
Medtr3g054010 10.0kb upstream 10.0kb upstream 10000 false chr3: 21406001-21416000 Medicago truncatula
Medtr3g054010 10.0kb downstream 10.0kb downstream 14848 true chr3: 21416001-21430848 Medicago truncatula
Medtr3g054010 10.0kb downstream 10.0kb downstream 10000 false chr3: 21420849-21430848 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041284 5273 Angiosperm View MSA
122310899 5265 Fabidae View MSA
124067950 5270 Rosid View MSA
123751091 5271 Pentapetalae View MSA
122792359 5272 Eudicot View MSA
121349766 5274 Embryophyte View MSA
123381435 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.278       Low
cufflinks 0.793        
cufflinks 0.453        
cufflinks 0.253       Low
cufflinks 0.825        
cufflinks 0.469        
cufflinks 0.517        
cufflinks 0.557        
cufflinks 1.84       High

0 Strain