Gene : Medtr3g053890 M. truncatula Mt4.0v1
Defline:  (1 of 5) 2.6.1.45 - Serine--glyoxylate transaminase / SGAT Description:  serine-glyoxylate aminotransferase-like protein
Genomic Order:  1788 Name:  ? Medtr3g053890
Secondary Identifier:  ? PAC:31059411
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula GLYSYN-ALA-PWY Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g053890 0.5kb upstream 0.5kb upstream 5468 true chr3: 16788205-16793672 Medicago truncatula
Medtr3g053890 0.5kb upstream 0.5kb upstream 500 false chr3: 16788205-16788704 Medicago truncatula
Medtr3g053890 0.5kb downstream 0.5kb downstream 5468 true chr3: 16788705-16794172 Medicago truncatula
Medtr3g053890 0.5kb downstream 0.5kb downstream 500 false chr3: 16793673-16794172 Medicago truncatula
Medtr3g053890 1.0kb upstream 1.0kb upstream 5968 true chr3: 16787705-16793672 Medicago truncatula
Medtr3g053890 1.0kb upstream 1.0kb upstream 1000 false chr3: 16787705-16788704 Medicago truncatula
Medtr3g053890 1.0kb downstream 1.0kb downstream 5968 true chr3: 16788705-16794672 Medicago truncatula
Medtr3g053890 1.0kb downstream 1.0kb downstream 1000 false chr3: 16793673-16794672 Medicago truncatula
Medtr3g053890 2.0kb upstream 2.0kb upstream 6968 true chr3: 16786705-16793672 Medicago truncatula
Medtr3g053890 2.0kb upstream 2.0kb upstream 2000 false chr3: 16786705-16788704 Medicago truncatula
Medtr3g053890 2.0kb downstream 2.0kb downstream 6968 true chr3: 16788705-16795672 Medicago truncatula
Medtr3g053890 2.0kb downstream 2.0kb downstream 2000 false chr3: 16793673-16795672 Medicago truncatula
Medtr3g053890 5.0kb upstream 5.0kb upstream 9968 true chr3: 16783705-16793672 Medicago truncatula
Medtr3g053890 5.0kb upstream 5.0kb upstream 5000 false chr3: 16783705-16788704 Medicago truncatula
Medtr3g053890 5.0kb downstream 5.0kb downstream 9968 true chr3: 16788705-16798672 Medicago truncatula
Medtr3g053890 5.0kb downstream 5.0kb downstream 5000 false chr3: 16793673-16798672 Medicago truncatula
Medtr3g053890 10.0kb upstream 10.0kb upstream 14968 true chr3: 16778705-16793672 Medicago truncatula
Medtr3g053890 10.0kb upstream 10.0kb upstream 10000 false chr3: 16778705-16788704 Medicago truncatula
Medtr3g053890 10.0kb downstream 10.0kb downstream 14968 true chr3: 16788705-16803672 Medicago truncatula
Medtr3g053890 10.0kb downstream 10.0kb downstream 10000 false chr3: 16793673-16803672 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122295061 5265 Fabidae View MSA
124065045 5270 Rosid View MSA
123739482 5271 Pentapetalae View MSA
122787135 5272 Eudicot View MSA
122044965 5273 Angiosperm View MSA
121345609 5274 Embryophyte View MSA
123427199 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.106       Low
cufflinks 190.86     High High
cufflinks 237.064     High High
cufflinks 0.453        
cufflinks 140.052     High  
cufflinks 0.096     Low Low
cufflinks 0.42        
cufflinks 246.828     High High
cufflinks 0.639        

0 Strain