Gene : Medtr3g028210 M. truncatula Mt4.0v1
Defline:  (1 of 7) PTHR31625:SF2 - COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED Description:  anthocyanin 5-aromatic acyltransferase
Genomic Order:  1057 Name:  ? Medtr3g028210
Secondary Identifier:  ? PAC:31054338
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5307 Medicago truncatula pathologic  
Mtruncatula PWY-5310 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g028210 0.5kb upstream 0.5kb upstream 2284 true chr3: 8944365-8946648 Medicago truncatula
Medtr3g028210 0.5kb upstream 0.5kb upstream 500 false chr3: 8946149-8946648 Medicago truncatula
Medtr3g028210 0.5kb downstream 0.5kb downstream 2284 true chr3: 8943865-8946148 Medicago truncatula
Medtr3g028210 0.5kb downstream 0.5kb downstream 500 false chr3: 8943865-8944364 Medicago truncatula
Medtr3g028210 1.0kb upstream 1.0kb upstream 2784 true chr3: 8944365-8947148 Medicago truncatula
Medtr3g028210 1.0kb upstream 1.0kb upstream 1000 false chr3: 8946149-8947148 Medicago truncatula
Medtr3g028210 1.0kb downstream 1.0kb downstream 2784 true chr3: 8943365-8946148 Medicago truncatula
Medtr3g028210 1.0kb downstream 1.0kb downstream 1000 false chr3: 8943365-8944364 Medicago truncatula
Medtr3g028210 2.0kb upstream 2.0kb upstream 3784 true chr3: 8944365-8948148 Medicago truncatula
Medtr3g028210 2.0kb upstream 2.0kb upstream 2000 false chr3: 8946149-8948148 Medicago truncatula
Medtr3g028210 2.0kb downstream 2.0kb downstream 3784 true chr3: 8942365-8946148 Medicago truncatula
Medtr3g028210 2.0kb downstream 2.0kb downstream 2000 false chr3: 8942365-8944364 Medicago truncatula
Medtr3g028210 5.0kb upstream 5.0kb upstream 6784 true chr3: 8944365-8951148 Medicago truncatula
Medtr3g028210 5.0kb upstream 5.0kb upstream 5000 false chr3: 8946149-8951148 Medicago truncatula
Medtr3g028210 5.0kb downstream 5.0kb downstream 6784 true chr3: 8939365-8946148 Medicago truncatula
Medtr3g028210 5.0kb downstream 5.0kb downstream 5000 false chr3: 8939365-8944364 Medicago truncatula
Medtr3g028210 10.0kb upstream 10.0kb upstream 11784 true chr3: 8944365-8956148 Medicago truncatula
Medtr3g028210 10.0kb upstream 10.0kb upstream 10000 false chr3: 8946149-8956148 Medicago truncatula
Medtr3g028210 10.0kb downstream 10.0kb downstream 11784 true chr3: 8934365-8946148 Medicago truncatula
Medtr3g028210 10.0kb downstream 10.0kb downstream 10000 false chr3: 8934365-8944364 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313056 5265 Fabidae View MSA
124073771 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.55        
cufflinks 0.023     Low Low
cufflinks 0.013     Low Low
cufflinks 0.462        
cufflinks 0.053     Low  
cufflinks 1.493        
cufflinks 2.125       High
cufflinks 0.035     Low  
cufflinks 2.828       High

0 Strain