Gene : Medtr3g030040 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF61 - X-BOX TRANSCRIPTION FACTOR-RELATED Description:  cellulose synthase-like protein
Genomic Order:  1128 Name:  ? Medtr3g030040
Secondary Identifier:  ? PAC:31059747
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1001 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g030040 0.5kb upstream 0.5kb upstream 9671 true chr3: 9473545-9483215 Medicago truncatula
Medtr3g030040 0.5kb upstream 0.5kb upstream 500 false chr3: 9473545-9474044 Medicago truncatula
Medtr3g030040 0.5kb downstream 0.5kb downstream 9671 true chr3: 9474045-9483715 Medicago truncatula
Medtr3g030040 0.5kb downstream 0.5kb downstream 500 false chr3: 9483216-9483715 Medicago truncatula
Medtr3g030040 1.0kb upstream 1.0kb upstream 10171 true chr3: 9473045-9483215 Medicago truncatula
Medtr3g030040 1.0kb upstream 1.0kb upstream 1000 false chr3: 9473045-9474044 Medicago truncatula
Medtr3g030040 1.0kb downstream 1.0kb downstream 10171 true chr3: 9474045-9484215 Medicago truncatula
Medtr3g030040 1.0kb downstream 1.0kb downstream 1000 false chr3: 9483216-9484215 Medicago truncatula
Medtr3g030040 2.0kb upstream 2.0kb upstream 11171 true chr3: 9472045-9483215 Medicago truncatula
Medtr3g030040 2.0kb upstream 2.0kb upstream 2000 false chr3: 9472045-9474044 Medicago truncatula
Medtr3g030040 2.0kb downstream 2.0kb downstream 11171 true chr3: 9474045-9485215 Medicago truncatula
Medtr3g030040 2.0kb downstream 2.0kb downstream 2000 false chr3: 9483216-9485215 Medicago truncatula
Medtr3g030040 5.0kb upstream 5.0kb upstream 14171 true chr3: 9469045-9483215 Medicago truncatula
Medtr3g030040 5.0kb upstream 5.0kb upstream 5000 false chr3: 9469045-9474044 Medicago truncatula
Medtr3g030040 5.0kb downstream 5.0kb downstream 14171 true chr3: 9474045-9488215 Medicago truncatula
Medtr3g030040 5.0kb downstream 5.0kb downstream 5000 false chr3: 9483216-9488215 Medicago truncatula
Medtr3g030040 10.0kb upstream 10.0kb upstream 19171 true chr3: 9464045-9483215 Medicago truncatula
Medtr3g030040 10.0kb upstream 10.0kb upstream 10000 false chr3: 9464045-9474044 Medicago truncatula
Medtr3g030040 10.0kb downstream 10.0kb downstream 19171 true chr3: 9474045-9493215 Medicago truncatula
Medtr3g030040 10.0kb downstream 10.0kb downstream 10000 false chr3: 9483216-9493215 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314851 5265 Fabidae View MSA
124068602 5270 Rosid View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.437        
cufflinks 18.682     High  
cufflinks 15.148     High  
cufflinks 2.878       Low
cufflinks 14.192     High  
cufflinks 2.685       Low
cufflinks 8.944        
cufflinks 13.231     High  
cufflinks 17.415     High  

0 Strain