Gene : Medtr3g030850 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR34940:SF1 - PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC Description:  photosystem II 5 kDa protein
Genomic Order:  1176 Name:  ? Medtr3g030850
Secondary Identifier:  ? PAC:31056236
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g030850 0.5kb upstream 0.5kb upstream 1910 true chr3: 9799806-9801715 Medicago truncatula
Medtr3g030850 0.5kb upstream 0.5kb upstream 500 false chr3: 9801216-9801715 Medicago truncatula
Medtr3g030850 0.5kb downstream 0.5kb downstream 1910 true chr3: 9799306-9801215 Medicago truncatula
Medtr3g030850 0.5kb downstream 0.5kb downstream 500 false chr3: 9799306-9799805 Medicago truncatula
Medtr3g030850 1.0kb upstream 1.0kb upstream 2410 true chr3: 9799806-9802215 Medicago truncatula
Medtr3g030850 1.0kb upstream 1.0kb upstream 1000 false chr3: 9801216-9802215 Medicago truncatula
Medtr3g030850 1.0kb downstream 1.0kb downstream 2410 true chr3: 9798806-9801215 Medicago truncatula
Medtr3g030850 1.0kb downstream 1.0kb downstream 1000 false chr3: 9798806-9799805 Medicago truncatula
Medtr3g030850 2.0kb upstream 2.0kb upstream 3410 true chr3: 9799806-9803215 Medicago truncatula
Medtr3g030850 2.0kb upstream 2.0kb upstream 2000 false chr3: 9801216-9803215 Medicago truncatula
Medtr3g030850 2.0kb downstream 2.0kb downstream 3410 true chr3: 9797806-9801215 Medicago truncatula
Medtr3g030850 2.0kb downstream 2.0kb downstream 2000 false chr3: 9797806-9799805 Medicago truncatula
Medtr3g030850 5.0kb upstream 5.0kb upstream 6410 true chr3: 9799806-9806215 Medicago truncatula
Medtr3g030850 5.0kb upstream 5.0kb upstream 5000 false chr3: 9801216-9806215 Medicago truncatula
Medtr3g030850 5.0kb downstream 5.0kb downstream 6410 true chr3: 9794806-9801215 Medicago truncatula
Medtr3g030850 5.0kb downstream 5.0kb downstream 5000 false chr3: 9794806-9799805 Medicago truncatula
Medtr3g030850 10.0kb upstream 10.0kb upstream 11410 true chr3: 9799806-9811215 Medicago truncatula
Medtr3g030850 10.0kb upstream 10.0kb upstream 10000 false chr3: 9801216-9811215 Medicago truncatula
Medtr3g030850 10.0kb downstream 10.0kb downstream 11410 true chr3: 9789806-9801215 Medicago truncatula
Medtr3g030850 10.0kb downstream 10.0kb downstream 10000 false chr3: 9789806-9799805 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305386 5265 Fabidae View MSA
124063108 5270 Rosid View MSA
123738637 5271 Pentapetalae View MSA
122793683 5272 Eudicot View MSA
122046745 5273 Angiosperm View MSA
121349271 5274 Embryophyte View MSA
123427633 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.555        
cufflinks 142.309     High  
cufflinks 188.375     High  
cufflinks 17.629     High  
cufflinks 169.211     High  
cufflinks 42.965     High  
cufflinks 1.795       Low
cufflinks 184.822     High  
cufflinks 1.944       Low

0 Strain