Gene : Medtr3g031830 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31165:SF6 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 Description:  DUF640 family protein
Genomic Order:  2819 Name:  ? Medtr3g031830
Secondary Identifier:  ? PAC:31055808
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g031830 0.5kb upstream 0.5kb upstream 2079 true chr3: 26584080-26586158 Medicago truncatula
Medtr3g031830 0.5kb upstream 0.5kb upstream 500 false chr3: 26584080-26584579 Medicago truncatula
Medtr3g031830 0.5kb downstream 0.5kb downstream 2079 true chr3: 26584580-26586658 Medicago truncatula
Medtr3g031830 0.5kb downstream 0.5kb downstream 500 false chr3: 26586159-26586658 Medicago truncatula
Medtr3g031830 1.0kb upstream 1.0kb upstream 2579 true chr3: 26583580-26586158 Medicago truncatula
Medtr3g031830 1.0kb upstream 1.0kb upstream 1000 false chr3: 26583580-26584579 Medicago truncatula
Medtr3g031830 1.0kb downstream 1.0kb downstream 2579 true chr3: 26584580-26587158 Medicago truncatula
Medtr3g031830 1.0kb downstream 1.0kb downstream 1000 false chr3: 26586159-26587158 Medicago truncatula
Medtr3g031830 2.0kb upstream 2.0kb upstream 3579 true chr3: 26582580-26586158 Medicago truncatula
Medtr3g031830 2.0kb upstream 2.0kb upstream 2000 false chr3: 26582580-26584579 Medicago truncatula
Medtr3g031830 2.0kb downstream 2.0kb downstream 3579 true chr3: 26584580-26588158 Medicago truncatula
Medtr3g031830 2.0kb downstream 2.0kb downstream 2000 false chr3: 26586159-26588158 Medicago truncatula
Medtr3g031830 5.0kb upstream 5.0kb upstream 6579 true chr3: 26579580-26586158 Medicago truncatula
Medtr3g031830 5.0kb upstream 5.0kb upstream 5000 false chr3: 26579580-26584579 Medicago truncatula
Medtr3g031830 5.0kb downstream 5.0kb downstream 6579 true chr3: 26584580-26591158 Medicago truncatula
Medtr3g031830 5.0kb downstream 5.0kb downstream 5000 false chr3: 26586159-26591158 Medicago truncatula
Medtr3g031830 10.0kb upstream 10.0kb upstream 11579 true chr3: 26574580-26586158 Medicago truncatula
Medtr3g031830 10.0kb upstream 10.0kb upstream 10000 false chr3: 26574580-26584579 Medicago truncatula
Medtr3g031830 10.0kb downstream 10.0kb downstream 11579 true chr3: 26584580-26596158 Medicago truncatula
Medtr3g031830 10.0kb downstream 10.0kb downstream 10000 false chr3: 26586159-26596158 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310216 5265 Fabidae View MSA
124067272 5270 Rosid View MSA
123741885 5271 Pentapetalae View MSA
122789357 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.656     High High
cufflinks 1.073        
cufflinks 0.648       Low
cufflinks 9.58     High  
cufflinks 0.969        
cufflinks 4.964        
cufflinks 2.063        
cufflinks 0.854        
cufflinks 7.235        

0 Strain