Gene : Medtr3g017390 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF00176//PF07496 - SNF2 family N-terminal domain (SNF2_N) // CW-type Zinc Finger (zf-CW) Description:  chromatin remodeling complex subunit
Genomic Order:  624 Name:  ? Medtr3g017390
Secondary Identifier:  ? PAC:31059085
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g017390 0.5kb upstream 0.5kb upstream 3916 true chr3: 4943396-4947311 Medicago truncatula
Medtr3g017390 0.5kb upstream 0.5kb upstream 500 false chr3: 4946812-4947311 Medicago truncatula
Medtr3g017390 0.5kb downstream 0.5kb downstream 3916 true chr3: 4942896-4946811 Medicago truncatula
Medtr3g017390 0.5kb downstream 0.5kb downstream 500 false chr3: 4942896-4943395 Medicago truncatula
Medtr3g017390 1.0kb upstream 1.0kb upstream 4416 true chr3: 4943396-4947811 Medicago truncatula
Medtr3g017390 1.0kb upstream 1.0kb upstream 1000 false chr3: 4946812-4947811 Medicago truncatula
Medtr3g017390 1.0kb downstream 1.0kb downstream 4416 true chr3: 4942396-4946811 Medicago truncatula
Medtr3g017390 1.0kb downstream 1.0kb downstream 1000 false chr3: 4942396-4943395 Medicago truncatula
Medtr3g017390 2.0kb upstream 2.0kb upstream 5416 true chr3: 4943396-4948811 Medicago truncatula
Medtr3g017390 2.0kb upstream 2.0kb upstream 2000 false chr3: 4946812-4948811 Medicago truncatula
Medtr3g017390 2.0kb downstream 2.0kb downstream 5416 true chr3: 4941396-4946811 Medicago truncatula
Medtr3g017390 2.0kb downstream 2.0kb downstream 2000 false chr3: 4941396-4943395 Medicago truncatula
Medtr3g017390 5.0kb upstream 5.0kb upstream 8416 true chr3: 4943396-4951811 Medicago truncatula
Medtr3g017390 5.0kb upstream 5.0kb upstream 5000 false chr3: 4946812-4951811 Medicago truncatula
Medtr3g017390 5.0kb downstream 5.0kb downstream 8416 true chr3: 4938396-4946811 Medicago truncatula
Medtr3g017390 5.0kb downstream 5.0kb downstream 5000 false chr3: 4938396-4943395 Medicago truncatula
Medtr3g017390 10.0kb upstream 10.0kb upstream 13416 true chr3: 4943396-4956811 Medicago truncatula
Medtr3g017390 10.0kb upstream 10.0kb upstream 10000 false chr3: 4946812-4956811 Medicago truncatula
Medtr3g017390 10.0kb downstream 10.0kb downstream 13416 true chr3: 4933396-4946811 Medicago truncatula
Medtr3g017390 10.0kb downstream 10.0kb downstream 10000 false chr3: 4933396-4943395 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122260550 5265 Fabidae Singleton cluster - no MSA
124067561 5270 Rosid View MSA
123738895 5271 Pentapetalae View MSA
122788096 5272 Eudicot View MSA
122041978 5273 Angiosperm View MSA
121346055 5274 Embryophyte View MSA
123424068 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.163       High
cufflinks 3.257        
cufflinks 4.3        
cufflinks 0.969       Low
cufflinks 3.764        
cufflinks 2.293        
cufflinks 3.511        
cufflinks 3.557        
cufflinks 2.233        

0 Strain