Gene : Medtr3g025880 M. truncatula Mt4.0v1
Defline:  (1 of 243) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Description:  RNA-binding (RRM/RBD/RNP motif) family protein
Genomic Order:  939 Name:  ? Medtr3g025880
Secondary Identifier:  ? PAC:31056554
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g025880 0.5kb upstream 0.5kb upstream 5098 true chr3: 7894080-7899177 Medicago truncatula
Medtr3g025880 0.5kb upstream 0.5kb upstream 500 false chr3: 7898678-7899177 Medicago truncatula
Medtr3g025880 0.5kb downstream 0.5kb downstream 5098 true chr3: 7893580-7898677 Medicago truncatula
Medtr3g025880 0.5kb downstream 0.5kb downstream 500 false chr3: 7893580-7894079 Medicago truncatula
Medtr3g025880 1.0kb upstream 1.0kb upstream 5598 true chr3: 7894080-7899677 Medicago truncatula
Medtr3g025880 1.0kb upstream 1.0kb upstream 1000 false chr3: 7898678-7899677 Medicago truncatula
Medtr3g025880 1.0kb downstream 1.0kb downstream 5598 true chr3: 7893080-7898677 Medicago truncatula
Medtr3g025880 1.0kb downstream 1.0kb downstream 1000 false chr3: 7893080-7894079 Medicago truncatula
Medtr3g025880 2.0kb upstream 2.0kb upstream 6598 true chr3: 7894080-7900677 Medicago truncatula
Medtr3g025880 2.0kb upstream 2.0kb upstream 2000 false chr3: 7898678-7900677 Medicago truncatula
Medtr3g025880 2.0kb downstream 2.0kb downstream 6598 true chr3: 7892080-7898677 Medicago truncatula
Medtr3g025880 2.0kb downstream 2.0kb downstream 2000 false chr3: 7892080-7894079 Medicago truncatula
Medtr3g025880 5.0kb upstream 5.0kb upstream 9598 true chr3: 7894080-7903677 Medicago truncatula
Medtr3g025880 5.0kb upstream 5.0kb upstream 5000 false chr3: 7898678-7903677 Medicago truncatula
Medtr3g025880 5.0kb downstream 5.0kb downstream 9598 true chr3: 7889080-7898677 Medicago truncatula
Medtr3g025880 5.0kb downstream 5.0kb downstream 5000 false chr3: 7889080-7894079 Medicago truncatula
Medtr3g025880 10.0kb upstream 10.0kb upstream 14598 true chr3: 7894080-7908677 Medicago truncatula
Medtr3g025880 10.0kb upstream 10.0kb upstream 10000 false chr3: 7898678-7908677 Medicago truncatula
Medtr3g025880 10.0kb downstream 10.0kb downstream 14598 true chr3: 7884080-7898677 Medicago truncatula
Medtr3g025880 10.0kb downstream 10.0kb downstream 10000 false chr3: 7884080-7894079 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122287591 5265 Fabidae View MSA
124038622 5270 Rosid View MSA
123747878 5271 Pentapetalae View MSA
122791665 5272 Eudicot View MSA
122044174 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121348177 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.871        
cufflinks 1.224        
cufflinks 1.395        
cufflinks 1.084        
cufflinks 3.971       High
cufflinks 0.621       Low
cufflinks 1.012        
cufflinks 2.134        
cufflinks 1.654        

0 Strain