Gene : Medtr3g027650 M. truncatula Mt4.0v1
Defline:  (1 of 161) PF00010 - Helix-loop-helix DNA-binding domain (HLH) Description:  transcription factor bHLH122-like protein
Genomic Order:  1031 Name:  ? Medtr3g027650
Secondary Identifier:  ? PAC:31053754
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g027650 0.5kb upstream 0.5kb upstream 3998 true chr3: 8695587-8699584 Medicago truncatula
Medtr3g027650 0.5kb upstream 0.5kb upstream 500 false chr3: 8699085-8699584 Medicago truncatula
Medtr3g027650 0.5kb downstream 0.5kb downstream 3998 true chr3: 8695087-8699084 Medicago truncatula
Medtr3g027650 0.5kb downstream 0.5kb downstream 500 false chr3: 8695087-8695586 Medicago truncatula
Medtr3g027650 1.0kb upstream 1.0kb upstream 4498 true chr3: 8695587-8700084 Medicago truncatula
Medtr3g027650 1.0kb upstream 1.0kb upstream 1000 false chr3: 8699085-8700084 Medicago truncatula
Medtr3g027650 1.0kb downstream 1.0kb downstream 4498 true chr3: 8694587-8699084 Medicago truncatula
Medtr3g027650 1.0kb downstream 1.0kb downstream 1000 false chr3: 8694587-8695586 Medicago truncatula
Medtr3g027650 2.0kb upstream 2.0kb upstream 5498 true chr3: 8695587-8701084 Medicago truncatula
Medtr3g027650 2.0kb upstream 2.0kb upstream 2000 false chr3: 8699085-8701084 Medicago truncatula
Medtr3g027650 2.0kb downstream 2.0kb downstream 5498 true chr3: 8693587-8699084 Medicago truncatula
Medtr3g027650 2.0kb downstream 2.0kb downstream 2000 false chr3: 8693587-8695586 Medicago truncatula
Medtr3g027650 5.0kb upstream 5.0kb upstream 8498 true chr3: 8695587-8704084 Medicago truncatula
Medtr3g027650 5.0kb upstream 5.0kb upstream 5000 false chr3: 8699085-8704084 Medicago truncatula
Medtr3g027650 5.0kb downstream 5.0kb downstream 8498 true chr3: 8690587-8699084 Medicago truncatula
Medtr3g027650 5.0kb downstream 5.0kb downstream 5000 false chr3: 8690587-8695586 Medicago truncatula
Medtr3g027650 10.0kb upstream 10.0kb upstream 13498 true chr3: 8695587-8709084 Medicago truncatula
Medtr3g027650 10.0kb upstream 10.0kb upstream 10000 false chr3: 8699085-8709084 Medicago truncatula
Medtr3g027650 10.0kb downstream 10.0kb downstream 13498 true chr3: 8685587-8699084 Medicago truncatula
Medtr3g027650 10.0kb downstream 10.0kb downstream 10000 false chr3: 8685587-8695586 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311169 5265 Fabidae View MSA
124073794 5270 Rosid View MSA
123751595 5271 Pentapetalae View MSA
122793357 5272 Eudicot View MSA
122051356 5273 Angiosperm View MSA
121349754 5274 Embryophyte View MSA
123381429 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.101       High
cufflinks 0.019     Low  
cufflinks 0.017     Low  
cufflinks 0.005     Low Low
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.023     Low  
cufflinks 0.003     Low Low

0 Strain