Gene : Medtr3g027140 M. truncatula Mt4.0v1
Defline:  (1 of 20) KOG0131 - Splicing factor 3b, subunit 4 Description:  RNA-binding (RRM/RBD/RNP motif) family protein
Genomic Order:  1003 Name:  ? Medtr3g027140
Secondary Identifier:  ? PAC:31058503
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g027140 0.5kb upstream 0.5kb upstream 9889 true chr3: 8404220-8414108 Medicago truncatula
Medtr3g027140 0.5kb upstream 0.5kb upstream 500 false chr3: 8413609-8414108 Medicago truncatula
Medtr3g027140 0.5kb downstream 0.5kb downstream 9889 true chr3: 8403720-8413608 Medicago truncatula
Medtr3g027140 0.5kb downstream 0.5kb downstream 500 false chr3: 8403720-8404219 Medicago truncatula
Medtr3g027140 1.0kb upstream 1.0kb upstream 10389 true chr3: 8404220-8414608 Medicago truncatula
Medtr3g027140 1.0kb upstream 1.0kb upstream 1000 false chr3: 8413609-8414608 Medicago truncatula
Medtr3g027140 1.0kb downstream 1.0kb downstream 10389 true chr3: 8403220-8413608 Medicago truncatula
Medtr3g027140 1.0kb downstream 1.0kb downstream 1000 false chr3: 8403220-8404219 Medicago truncatula
Medtr3g027140 2.0kb upstream 2.0kb upstream 11389 true chr3: 8404220-8415608 Medicago truncatula
Medtr3g027140 2.0kb upstream 2.0kb upstream 2000 false chr3: 8413609-8415608 Medicago truncatula
Medtr3g027140 2.0kb downstream 2.0kb downstream 11389 true chr3: 8402220-8413608 Medicago truncatula
Medtr3g027140 2.0kb downstream 2.0kb downstream 2000 false chr3: 8402220-8404219 Medicago truncatula
Medtr3g027140 5.0kb upstream 5.0kb upstream 14389 true chr3: 8404220-8418608 Medicago truncatula
Medtr3g027140 5.0kb upstream 5.0kb upstream 5000 false chr3: 8413609-8418608 Medicago truncatula
Medtr3g027140 5.0kb downstream 5.0kb downstream 14389 true chr3: 8399220-8413608 Medicago truncatula
Medtr3g027140 5.0kb downstream 5.0kb downstream 5000 false chr3: 8399220-8404219 Medicago truncatula
Medtr3g027140 10.0kb upstream 10.0kb upstream 19389 true chr3: 8404220-8423608 Medicago truncatula
Medtr3g027140 10.0kb upstream 10.0kb upstream 10000 false chr3: 8413609-8423608 Medicago truncatula
Medtr3g027140 10.0kb downstream 10.0kb downstream 19389 true chr3: 8394220-8413608 Medicago truncatula
Medtr3g027140 10.0kb downstream 10.0kb downstream 10000 false chr3: 8394220-8404219 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026282 5273 Angiosperm View MSA
122303305 5265 Fabidae View MSA
124063471 5270 Rosid View MSA
123737164 5271 Pentapetalae View MSA
122793364 5272 Eudicot View MSA
123429142 5275 Viridiplantae View MSA
121296259 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.276        
cufflinks 7.174       High
cufflinks 4.68        
cufflinks 0.16        
cufflinks 10.774     High High
cufflinks 0.104     Low Low
cufflinks 0.221        
cufflinks 7.902       High
cufflinks 0.213        

0 Strain