Gene : Medtr3g008260 M. truncatula Mt4.0v1
Defline:  (1 of 1) 2.7.1.138 - Ceramide kinase / Acylsphingosine kinase Description:  ceramide kinase-like protein
Genomic Order:  190 Name:  ? Medtr3g008260
Secondary Identifier:  ? PAC:31053507
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5129 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g008260 0.5kb upstream 0.5kb upstream 8399 true chr3: 1388557-1396955 Medicago truncatula
Medtr3g008260 0.5kb upstream 0.5kb upstream 500 false chr3: 1388557-1389056 Medicago truncatula
Medtr3g008260 0.5kb downstream 0.5kb downstream 8399 true chr3: 1389057-1397455 Medicago truncatula
Medtr3g008260 0.5kb downstream 0.5kb downstream 500 false chr3: 1396956-1397455 Medicago truncatula
Medtr3g008260 1.0kb upstream 1.0kb upstream 8899 true chr3: 1388057-1396955 Medicago truncatula
Medtr3g008260 1.0kb upstream 1.0kb upstream 1000 false chr3: 1388057-1389056 Medicago truncatula
Medtr3g008260 1.0kb downstream 1.0kb downstream 8899 true chr3: 1389057-1397955 Medicago truncatula
Medtr3g008260 1.0kb downstream 1.0kb downstream 1000 false chr3: 1396956-1397955 Medicago truncatula
Medtr3g008260 2.0kb upstream 2.0kb upstream 9899 true chr3: 1387057-1396955 Medicago truncatula
Medtr3g008260 2.0kb upstream 2.0kb upstream 2000 false chr3: 1387057-1389056 Medicago truncatula
Medtr3g008260 2.0kb downstream 2.0kb downstream 9899 true chr3: 1389057-1398955 Medicago truncatula
Medtr3g008260 2.0kb downstream 2.0kb downstream 2000 false chr3: 1396956-1398955 Medicago truncatula
Medtr3g008260 5.0kb upstream 5.0kb upstream 12899 true chr3: 1384057-1396955 Medicago truncatula
Medtr3g008260 5.0kb upstream 5.0kb upstream 5000 false chr3: 1384057-1389056 Medicago truncatula
Medtr3g008260 5.0kb downstream 5.0kb downstream 12899 true chr3: 1389057-1401955 Medicago truncatula
Medtr3g008260 5.0kb downstream 5.0kb downstream 5000 false chr3: 1396956-1401955 Medicago truncatula
Medtr3g008260 10.0kb upstream 10.0kb upstream 17899 true chr3: 1379057-1396955 Medicago truncatula
Medtr3g008260 10.0kb upstream 10.0kb upstream 10000 false chr3: 1379057-1389056 Medicago truncatula
Medtr3g008260 10.0kb downstream 10.0kb downstream 17899 true chr3: 1389057-1406955 Medicago truncatula
Medtr3g008260 10.0kb downstream 10.0kb downstream 10000 false chr3: 1396956-1406955 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308468 5265 Fabidae View MSA
124066629 5270 Rosid View MSA
123746434 5271 Pentapetalae View MSA
122791324 5272 Eudicot View MSA
122045057 5273 Angiosperm View MSA
121345163 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.881        
cufflinks 3.052        
cufflinks 3.489       High
cufflinks 1.988        
cufflinks 2.791        
cufflinks 1.393       Low
cufflinks 2.699        
cufflinks 3.168        
cufflinks 1.603       Low

0 Strain