Gene : Medtr3g012030 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10252//PTHR10252:SF40 - HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED Description:  negative cofactor 2 transcriptional co-repressor, putative
Genomic Order:  421 Name:  ? Medtr3g012030
Secondary Identifier:  ? PAC:31061426
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g012030 0.5kb upstream 0.5kb upstream 5419 true chr3: 3181373-3186791 Medicago truncatula
Medtr3g012030 0.5kb upstream 0.5kb upstream 500 false chr3: 3186292-3186791 Medicago truncatula
Medtr3g012030 0.5kb downstream 0.5kb downstream 5419 true chr3: 3180873-3186291 Medicago truncatula
Medtr3g012030 0.5kb downstream 0.5kb downstream 500 false chr3: 3180873-3181372 Medicago truncatula
Medtr3g012030 1.0kb upstream 1.0kb upstream 5919 true chr3: 3181373-3187291 Medicago truncatula
Medtr3g012030 1.0kb upstream 1.0kb upstream 1000 false chr3: 3186292-3187291 Medicago truncatula
Medtr3g012030 1.0kb downstream 1.0kb downstream 5919 true chr3: 3180373-3186291 Medicago truncatula
Medtr3g012030 1.0kb downstream 1.0kb downstream 1000 false chr3: 3180373-3181372 Medicago truncatula
Medtr3g012030 2.0kb upstream 2.0kb upstream 6919 true chr3: 3181373-3188291 Medicago truncatula
Medtr3g012030 2.0kb upstream 2.0kb upstream 2000 false chr3: 3186292-3188291 Medicago truncatula
Medtr3g012030 2.0kb downstream 2.0kb downstream 6919 true chr3: 3179373-3186291 Medicago truncatula
Medtr3g012030 2.0kb downstream 2.0kb downstream 2000 false chr3: 3179373-3181372 Medicago truncatula
Medtr3g012030 5.0kb upstream 5.0kb upstream 9919 true chr3: 3181373-3191291 Medicago truncatula
Medtr3g012030 5.0kb upstream 5.0kb upstream 5000 false chr3: 3186292-3191291 Medicago truncatula
Medtr3g012030 5.0kb downstream 5.0kb downstream 9919 true chr3: 3176373-3186291 Medicago truncatula
Medtr3g012030 5.0kb downstream 5.0kb downstream 5000 false chr3: 3176373-3181372 Medicago truncatula
Medtr3g012030 10.0kb upstream 10.0kb upstream 14919 true chr3: 3181373-3196291 Medicago truncatula
Medtr3g012030 10.0kb upstream 10.0kb upstream 10000 false chr3: 3186292-3196291 Medicago truncatula
Medtr3g012030 10.0kb downstream 10.0kb downstream 14919 true chr3: 3171373-3186291 Medicago truncatula
Medtr3g012030 10.0kb downstream 10.0kb downstream 10000 false chr3: 3171373-3181372 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309450 5265 Fabidae View MSA
124069286 5270 Rosid View MSA
123742462 5271 Pentapetalae View MSA
122792661 5272 Eudicot View MSA
122049084 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121345521 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.045        
cufflinks 0.69        
cufflinks 0.71        
cufflinks 0.533        
cufflinks 0.632        
cufflinks 0.099     Low Low
cufflinks 0.875        
cufflinks 0.615        
cufflinks 0.735        

0 Strain