Gene : Medtr3g078090 M. truncatula Mt4.0v1
Defline:  (1 of 52) PF03181 - BURP domain (BURP) Description:  polygalacturonase non-catalytic protein
Genomic Order:  3948 Name:  ? Medtr3g078090
Secondary Identifier:  ? PAC:31058578
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g078090 0.5kb upstream 0.5kb upstream 2891 true chr3: 35177428-35180318 Medicago truncatula
Medtr3g078090 0.5kb upstream 0.5kb upstream 500 false chr3: 35177428-35177927 Medicago truncatula
Medtr3g078090 0.5kb downstream 0.5kb downstream 2891 true chr3: 35177928-35180818 Medicago truncatula
Medtr3g078090 0.5kb downstream 0.5kb downstream 500 false chr3: 35180319-35180818 Medicago truncatula
Medtr3g078090 1.0kb upstream 1.0kb upstream 3391 true chr3: 35176928-35180318 Medicago truncatula
Medtr3g078090 1.0kb upstream 1.0kb upstream 1000 false chr3: 35176928-35177927 Medicago truncatula
Medtr3g078090 1.0kb downstream 1.0kb downstream 3391 true chr3: 35177928-35181318 Medicago truncatula
Medtr3g078090 1.0kb downstream 1.0kb downstream 1000 false chr3: 35180319-35181318 Medicago truncatula
Medtr3g078090 2.0kb upstream 2.0kb upstream 4391 true chr3: 35175928-35180318 Medicago truncatula
Medtr3g078090 2.0kb upstream 2.0kb upstream 2000 false chr3: 35175928-35177927 Medicago truncatula
Medtr3g078090 2.0kb downstream 2.0kb downstream 4391 true chr3: 35177928-35182318 Medicago truncatula
Medtr3g078090 2.0kb downstream 2.0kb downstream 2000 false chr3: 35180319-35182318 Medicago truncatula
Medtr3g078090 5.0kb upstream 5.0kb upstream 7391 true chr3: 35172928-35180318 Medicago truncatula
Medtr3g078090 5.0kb upstream 5.0kb upstream 5000 false chr3: 35172928-35177927 Medicago truncatula
Medtr3g078090 5.0kb downstream 5.0kb downstream 7391 true chr3: 35177928-35185318 Medicago truncatula
Medtr3g078090 5.0kb downstream 5.0kb downstream 5000 false chr3: 35180319-35185318 Medicago truncatula
Medtr3g078090 10.0kb upstream 10.0kb upstream 12391 true chr3: 35167928-35180318 Medicago truncatula
Medtr3g078090 10.0kb upstream 10.0kb upstream 10000 false chr3: 35167928-35177927 Medicago truncatula
Medtr3g078090 10.0kb downstream 10.0kb downstream 12391 true chr3: 35177928-35190318 Medicago truncatula
Medtr3g078090 10.0kb downstream 10.0kb downstream 10000 false chr3: 35180319-35190318 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310118 5265 Fabidae View MSA
124071766 5270 Rosid View MSA
123746875 5271 Pentapetalae View MSA
122795038 5272 Eudicot View MSA
122050223 5273 Angiosperm View MSA
121351029 5274 Embryophyte View MSA
123381981 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.063     Low Low
cufflinks 0.423        
cufflinks 0.158        
cufflinks 1.671       High
cufflinks 0.318        
cufflinks 0.026     Low Low
cufflinks 0.652        
cufflinks 0.185        
cufflinks 1.635       High

0 Strain