Gene : Medtr3g078860 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11404:SF17 - SUPEROXIDE DISMUTASE [FE] 3, CHLOROPLASTIC Description:  superoxide dismutase
Genomic Order:  4008 Name:  ? Medtr3g078860
Secondary Identifier:  ? PAC:31056852
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula DETOX1-PWY Medicago truncatula pathologic  
Mtruncatula DETOX1-PWY-1 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g078860 0.5kb upstream 0.5kb upstream 4458 true chr3: 35603989-35608446 Medicago truncatula
Medtr3g078860 0.5kb upstream 0.5kb upstream 500 false chr3: 35607947-35608446 Medicago truncatula
Medtr3g078860 0.5kb downstream 0.5kb downstream 4458 true chr3: 35603489-35607946 Medicago truncatula
Medtr3g078860 0.5kb downstream 0.5kb downstream 500 false chr3: 35603489-35603988 Medicago truncatula
Medtr3g078860 1.0kb upstream 1.0kb upstream 4958 true chr3: 35603989-35608946 Medicago truncatula
Medtr3g078860 1.0kb upstream 1.0kb upstream 1000 false chr3: 35607947-35608946 Medicago truncatula
Medtr3g078860 1.0kb downstream 1.0kb downstream 4958 true chr3: 35602989-35607946 Medicago truncatula
Medtr3g078860 1.0kb downstream 1.0kb downstream 1000 false chr3: 35602989-35603988 Medicago truncatula
Medtr3g078860 2.0kb upstream 2.0kb upstream 5958 true chr3: 35603989-35609946 Medicago truncatula
Medtr3g078860 2.0kb upstream 2.0kb upstream 2000 false chr3: 35607947-35609946 Medicago truncatula
Medtr3g078860 2.0kb downstream 2.0kb downstream 5958 true chr3: 35601989-35607946 Medicago truncatula
Medtr3g078860 2.0kb downstream 2.0kb downstream 2000 false chr3: 35601989-35603988 Medicago truncatula
Medtr3g078860 5.0kb upstream 5.0kb upstream 8958 true chr3: 35603989-35612946 Medicago truncatula
Medtr3g078860 5.0kb upstream 5.0kb upstream 5000 false chr3: 35607947-35612946 Medicago truncatula
Medtr3g078860 5.0kb downstream 5.0kb downstream 8958 true chr3: 35598989-35607946 Medicago truncatula
Medtr3g078860 5.0kb downstream 5.0kb downstream 5000 false chr3: 35598989-35603988 Medicago truncatula
Medtr3g078860 10.0kb upstream 10.0kb upstream 13958 true chr3: 35603989-35617946 Medicago truncatula
Medtr3g078860 10.0kb upstream 10.0kb upstream 10000 false chr3: 35607947-35617946 Medicago truncatula
Medtr3g078860 10.0kb downstream 10.0kb downstream 13958 true chr3: 35593989-35607946 Medicago truncatula
Medtr3g078860 10.0kb downstream 10.0kb downstream 10000 false chr3: 35593989-35603988 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307249 5265 Fabidae View MSA
124067465 5270 Rosid View MSA
123740223 5271 Pentapetalae View MSA
122788752 5272 Eudicot View MSA
122044976 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.172        
cufflinks 1.209        
cufflinks 1.093        
cufflinks 0.218        
cufflinks 2.887       High
cufflinks 0.093     Low Low
cufflinks 0.216        
cufflinks 0.907        
cufflinks 0.373        

0 Strain