Gene : Medtr3g078800 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR31852:SF0 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Description:  late embryogenesis abundant hydroxyproline-rich glycoprotein, putative
Genomic Order:  4003 Name:  ? Medtr3g078800
Secondary Identifier:  ? PAC:31053739
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g078800 0.5kb upstream 0.5kb upstream 1664 true chr3: 35573266-35574929 Medicago truncatula
Medtr3g078800 0.5kb upstream 0.5kb upstream 500 false chr3: 35573266-35573765 Medicago truncatula
Medtr3g078800 0.5kb downstream 0.5kb downstream 1664 true chr3: 35573766-35575429 Medicago truncatula
Medtr3g078800 0.5kb downstream 0.5kb downstream 500 false chr3: 35574930-35575429 Medicago truncatula
Medtr3g078800 1.0kb upstream 1.0kb upstream 2164 true chr3: 35572766-35574929 Medicago truncatula
Medtr3g078800 1.0kb upstream 1.0kb upstream 1000 false chr3: 35572766-35573765 Medicago truncatula
Medtr3g078800 1.0kb downstream 1.0kb downstream 2164 true chr3: 35573766-35575929 Medicago truncatula
Medtr3g078800 1.0kb downstream 1.0kb downstream 1000 false chr3: 35574930-35575929 Medicago truncatula
Medtr3g078800 2.0kb upstream 2.0kb upstream 3164 true chr3: 35571766-35574929 Medicago truncatula
Medtr3g078800 2.0kb upstream 2.0kb upstream 2000 false chr3: 35571766-35573765 Medicago truncatula
Medtr3g078800 2.0kb downstream 2.0kb downstream 3164 true chr3: 35573766-35576929 Medicago truncatula
Medtr3g078800 2.0kb downstream 2.0kb downstream 2000 false chr3: 35574930-35576929 Medicago truncatula
Medtr3g078800 5.0kb upstream 5.0kb upstream 6164 true chr3: 35568766-35574929 Medicago truncatula
Medtr3g078800 5.0kb upstream 5.0kb upstream 5000 false chr3: 35568766-35573765 Medicago truncatula
Medtr3g078800 5.0kb downstream 5.0kb downstream 6164 true chr3: 35573766-35579929 Medicago truncatula
Medtr3g078800 5.0kb downstream 5.0kb downstream 5000 false chr3: 35574930-35579929 Medicago truncatula
Medtr3g078800 10.0kb upstream 10.0kb upstream 11164 true chr3: 35563766-35574929 Medicago truncatula
Medtr3g078800 10.0kb upstream 10.0kb upstream 10000 false chr3: 35563766-35573765 Medicago truncatula
Medtr3g078800 10.0kb downstream 10.0kb downstream 11164 true chr3: 35573766-35584929 Medicago truncatula
Medtr3g078800 10.0kb downstream 10.0kb downstream 10000 false chr3: 35574930-35584929 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122294653 5265 Fabidae View MSA
124061418 5270 Rosid View MSA
123742078 5271 Pentapetalae View MSA
122788444 5272 Eudicot View MSA
122042676 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 183.161     High High
cufflinks 15.398     High Low
cufflinks 38.768     High  
cufflinks 104.854     High  
cufflinks 19.839     High Low
cufflinks 206.908     High High
cufflinks 76.643     High  
cufflinks 15.477     High Low
cufflinks 174.464     High  

0 Strain