Gene : Medtr3g081310 M. truncatula Mt4.0v1
Defline:  (1 of 210) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  PPR containing plant protein
Genomic Order:  4185 Name:  ? Medtr3g081310
Secondary Identifier:  ? PAC:31054853
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g081310 0.5kb upstream 0.5kb upstream 2677 true chr3: 36828218-36830894 Medicago truncatula
Medtr3g081310 0.5kb upstream 0.5kb upstream 500 false chr3: 36828218-36828717 Medicago truncatula
Medtr3g081310 0.5kb downstream 0.5kb downstream 2677 true chr3: 36828718-36831394 Medicago truncatula
Medtr3g081310 0.5kb downstream 0.5kb downstream 500 false chr3: 36830895-36831394 Medicago truncatula
Medtr3g081310 1.0kb upstream 1.0kb upstream 3177 true chr3: 36827718-36830894 Medicago truncatula
Medtr3g081310 1.0kb upstream 1.0kb upstream 1000 false chr3: 36827718-36828717 Medicago truncatula
Medtr3g081310 1.0kb downstream 1.0kb downstream 3177 true chr3: 36828718-36831894 Medicago truncatula
Medtr3g081310 1.0kb downstream 1.0kb downstream 1000 false chr3: 36830895-36831894 Medicago truncatula
Medtr3g081310 2.0kb upstream 2.0kb upstream 4177 true chr3: 36826718-36830894 Medicago truncatula
Medtr3g081310 2.0kb upstream 2.0kb upstream 2000 false chr3: 36826718-36828717 Medicago truncatula
Medtr3g081310 2.0kb downstream 2.0kb downstream 4177 true chr3: 36828718-36832894 Medicago truncatula
Medtr3g081310 2.0kb downstream 2.0kb downstream 2000 false chr3: 36830895-36832894 Medicago truncatula
Medtr3g081310 5.0kb upstream 5.0kb upstream 7177 true chr3: 36823718-36830894 Medicago truncatula
Medtr3g081310 5.0kb upstream 5.0kb upstream 5000 false chr3: 36823718-36828717 Medicago truncatula
Medtr3g081310 5.0kb downstream 5.0kb downstream 7177 true chr3: 36828718-36835894 Medicago truncatula
Medtr3g081310 5.0kb downstream 5.0kb downstream 5000 false chr3: 36830895-36835894 Medicago truncatula
Medtr3g081310 10.0kb upstream 10.0kb upstream 12177 true chr3: 36818718-36830894 Medicago truncatula
Medtr3g081310 10.0kb upstream 10.0kb upstream 10000 false chr3: 36818718-36828717 Medicago truncatula
Medtr3g081310 10.0kb downstream 10.0kb downstream 12177 true chr3: 36828718-36840894 Medicago truncatula
Medtr3g081310 10.0kb downstream 10.0kb downstream 10000 false chr3: 36830895-36840894 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305180 5265 Fabidae View MSA
124067728 5270 Rosid View MSA
123742188 5271 Pentapetalae View MSA
122792936 5272 Eudicot View MSA
122045505 5273 Angiosperm View MSA
121310455 5274 Embryophyte View MSA
123347933 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.634        
cufflinks 7.045        
cufflinks 7.142        
cufflinks 4.932        
cufflinks 10.378     High High
cufflinks 1.899       Low
cufflinks 5.631        
cufflinks 6.452        
cufflinks 9.527        

0 Strain