Gene : Medtr3g083480 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR22763:SF59 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MRP15 Description:  zinc finger, C3HC4 type (RING finger) protein
Genomic Order:  4316 Name:  ? Medtr3g083480
Secondary Identifier:  ? PAC:31057824
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g083480 0.5kb upstream 0.5kb upstream 3006 true chr3: 37657823-37660828 Medicago truncatula
Medtr3g083480 0.5kb upstream 0.5kb upstream 500 false chr3: 37657823-37658322 Medicago truncatula
Medtr3g083480 0.5kb downstream 0.5kb downstream 3006 true chr3: 37658323-37661328 Medicago truncatula
Medtr3g083480 0.5kb downstream 0.5kb downstream 500 false chr3: 37660829-37661328 Medicago truncatula
Medtr3g083480 1.0kb upstream 1.0kb upstream 3506 true chr3: 37657323-37660828 Medicago truncatula
Medtr3g083480 1.0kb upstream 1.0kb upstream 1000 false chr3: 37657323-37658322 Medicago truncatula
Medtr3g083480 1.0kb downstream 1.0kb downstream 3506 true chr3: 37658323-37661828 Medicago truncatula
Medtr3g083480 1.0kb downstream 1.0kb downstream 1000 false chr3: 37660829-37661828 Medicago truncatula
Medtr3g083480 2.0kb upstream 2.0kb upstream 4506 true chr3: 37656323-37660828 Medicago truncatula
Medtr3g083480 2.0kb upstream 2.0kb upstream 2000 false chr3: 37656323-37658322 Medicago truncatula
Medtr3g083480 2.0kb downstream 2.0kb downstream 4506 true chr3: 37658323-37662828 Medicago truncatula
Medtr3g083480 2.0kb downstream 2.0kb downstream 2000 false chr3: 37660829-37662828 Medicago truncatula
Medtr3g083480 5.0kb upstream 5.0kb upstream 7506 true chr3: 37653323-37660828 Medicago truncatula
Medtr3g083480 5.0kb upstream 5.0kb upstream 5000 false chr3: 37653323-37658322 Medicago truncatula
Medtr3g083480 5.0kb downstream 5.0kb downstream 7506 true chr3: 37658323-37665828 Medicago truncatula
Medtr3g083480 5.0kb downstream 5.0kb downstream 5000 false chr3: 37660829-37665828 Medicago truncatula
Medtr3g083480 10.0kb upstream 10.0kb upstream 12506 true chr3: 37648323-37660828 Medicago truncatula
Medtr3g083480 10.0kb upstream 10.0kb upstream 10000 false chr3: 37648323-37658322 Medicago truncatula
Medtr3g083480 10.0kb downstream 10.0kb downstream 12506 true chr3: 37658323-37670828 Medicago truncatula
Medtr3g083480 10.0kb downstream 10.0kb downstream 10000 false chr3: 37660829-37670828 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309509 5265 Fabidae View MSA
124061654 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.815     High High
cufflinks 8.394        
cufflinks 9.765        
cufflinks 13.615     High  
cufflinks 7.418       Low
cufflinks 8.165        
cufflinks 16.345     High  
cufflinks 8.067        
cufflinks 20.948     High High

0 Strain