Gene : Medtr3g072620 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31423:SF3 - PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED Description:  YbaK/proline-tRNA ligase associated domain protein
Genomic Order:  3621 Name:  ? Medtr3g072620
Secondary Identifier:  ? PAC:31059352
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g072620 0.5kb upstream 0.5kb upstream 4666 true chr3: 32674259-32678924 Medicago truncatula
Medtr3g072620 0.5kb upstream 0.5kb upstream 500 false chr3: 32674259-32674758 Medicago truncatula
Medtr3g072620 0.5kb downstream 0.5kb downstream 4666 true chr3: 32674759-32679424 Medicago truncatula
Medtr3g072620 0.5kb downstream 0.5kb downstream 500 false chr3: 32678925-32679424 Medicago truncatula
Medtr3g072620 1.0kb upstream 1.0kb upstream 5166 true chr3: 32673759-32678924 Medicago truncatula
Medtr3g072620 1.0kb upstream 1.0kb upstream 1000 false chr3: 32673759-32674758 Medicago truncatula
Medtr3g072620 1.0kb downstream 1.0kb downstream 5166 true chr3: 32674759-32679924 Medicago truncatula
Medtr3g072620 1.0kb downstream 1.0kb downstream 1000 false chr3: 32678925-32679924 Medicago truncatula
Medtr3g072620 2.0kb upstream 2.0kb upstream 6166 true chr3: 32672759-32678924 Medicago truncatula
Medtr3g072620 2.0kb upstream 2.0kb upstream 2000 false chr3: 32672759-32674758 Medicago truncatula
Medtr3g072620 2.0kb downstream 2.0kb downstream 6166 true chr3: 32674759-32680924 Medicago truncatula
Medtr3g072620 2.0kb downstream 2.0kb downstream 2000 false chr3: 32678925-32680924 Medicago truncatula
Medtr3g072620 5.0kb upstream 5.0kb upstream 9166 true chr3: 32669759-32678924 Medicago truncatula
Medtr3g072620 5.0kb upstream 5.0kb upstream 5000 false chr3: 32669759-32674758 Medicago truncatula
Medtr3g072620 5.0kb downstream 5.0kb downstream 9166 true chr3: 32674759-32683924 Medicago truncatula
Medtr3g072620 5.0kb downstream 5.0kb downstream 5000 false chr3: 32678925-32683924 Medicago truncatula
Medtr3g072620 10.0kb upstream 10.0kb upstream 14166 true chr3: 32664759-32678924 Medicago truncatula
Medtr3g072620 10.0kb upstream 10.0kb upstream 10000 false chr3: 32664759-32674758 Medicago truncatula
Medtr3g072620 10.0kb downstream 10.0kb downstream 14166 true chr3: 32674759-32688924 Medicago truncatula
Medtr3g072620 10.0kb downstream 10.0kb downstream 10000 false chr3: 32678925-32688924 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304964 5265 Fabidae View MSA
124062922 5270 Rosid View MSA
123736377 5271 Pentapetalae View MSA
122789736 5272 Eudicot View MSA
122045268 5273 Angiosperm View MSA
121348045 5274 Embryophyte View MSA
123425543 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.699        
cufflinks 3.679        
cufflinks 3.06        
cufflinks 2.885        
cufflinks 7.021       High
cufflinks 1.057       Low
cufflinks 3.912        
cufflinks 3.842        
cufflinks 3.886        

0 Strain