Gene : Medtr3g068005 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN Description:  E3 ubiquitin-protein ligase RING1-like protein
Genomic Order:  3341 Name:  ? Medtr3g068005
Secondary Identifier:  ? PAC:31057578
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g068005 0.5kb upstream 0.5kb upstream 3694 true chr3: 30644726-30648419 Medicago truncatula
Medtr3g068005 0.5kb upstream 0.5kb upstream 500 false chr3: 30647920-30648419 Medicago truncatula
Medtr3g068005 0.5kb downstream 0.5kb downstream 3694 true chr3: 30644226-30647919 Medicago truncatula
Medtr3g068005 0.5kb downstream 0.5kb downstream 500 false chr3: 30644226-30644725 Medicago truncatula
Medtr3g068005 1.0kb upstream 1.0kb upstream 4194 true chr3: 30644726-30648919 Medicago truncatula
Medtr3g068005 1.0kb upstream 1.0kb upstream 1000 false chr3: 30647920-30648919 Medicago truncatula
Medtr3g068005 1.0kb downstream 1.0kb downstream 4194 true chr3: 30643726-30647919 Medicago truncatula
Medtr3g068005 1.0kb downstream 1.0kb downstream 1000 false chr3: 30643726-30644725 Medicago truncatula
Medtr3g068005 2.0kb upstream 2.0kb upstream 5194 true chr3: 30644726-30649919 Medicago truncatula
Medtr3g068005 2.0kb upstream 2.0kb upstream 2000 false chr3: 30647920-30649919 Medicago truncatula
Medtr3g068005 2.0kb downstream 2.0kb downstream 5194 true chr3: 30642726-30647919 Medicago truncatula
Medtr3g068005 2.0kb downstream 2.0kb downstream 2000 false chr3: 30642726-30644725 Medicago truncatula
Medtr3g068005 5.0kb upstream 5.0kb upstream 8194 true chr3: 30644726-30652919 Medicago truncatula
Medtr3g068005 5.0kb upstream 5.0kb upstream 5000 false chr3: 30647920-30652919 Medicago truncatula
Medtr3g068005 5.0kb downstream 5.0kb downstream 8194 true chr3: 30639726-30647919 Medicago truncatula
Medtr3g068005 5.0kb downstream 5.0kb downstream 5000 false chr3: 30639726-30644725 Medicago truncatula
Medtr3g068005 10.0kb upstream 10.0kb upstream 13194 true chr3: 30644726-30657919 Medicago truncatula
Medtr3g068005 10.0kb upstream 10.0kb upstream 10000 false chr3: 30647920-30657919 Medicago truncatula
Medtr3g068005 10.0kb downstream 10.0kb downstream 13194 true chr3: 30634726-30647919 Medicago truncatula
Medtr3g068005 10.0kb downstream 10.0kb downstream 10000 false chr3: 30634726-30644725 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304195 5265 Fabidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.862     High High
cufflinks 12.945     High Low
cufflinks 20.582     High  
cufflinks 23.922     High  
cufflinks 13.072     High Low
cufflinks 19.23     High  
cufflinks 32.343     High  
cufflinks 14.729     High  
cufflinks 37.665     High High

0 Strain