Gene : Medtr3g071640 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR15071 - CATION-DEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR Description:  autophagy-related protein
Genomic Order:  3545 Name:  ? Medtr3g071640
Secondary Identifier:  ? PAC:31054802
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g071640 0.5kb upstream 0.5kb upstream 7864 true chr3: 32168628-32176491 Medicago truncatula
Medtr3g071640 0.5kb upstream 0.5kb upstream 500 false chr3: 32168628-32169127 Medicago truncatula
Medtr3g071640 0.5kb downstream 0.5kb downstream 7864 true chr3: 32169128-32176991 Medicago truncatula
Medtr3g071640 0.5kb downstream 0.5kb downstream 500 false chr3: 32176492-32176991 Medicago truncatula
Medtr3g071640 1.0kb upstream 1.0kb upstream 8364 true chr3: 32168128-32176491 Medicago truncatula
Medtr3g071640 1.0kb upstream 1.0kb upstream 1000 false chr3: 32168128-32169127 Medicago truncatula
Medtr3g071640 1.0kb downstream 1.0kb downstream 8364 true chr3: 32169128-32177491 Medicago truncatula
Medtr3g071640 1.0kb downstream 1.0kb downstream 1000 false chr3: 32176492-32177491 Medicago truncatula
Medtr3g071640 2.0kb upstream 2.0kb upstream 9364 true chr3: 32167128-32176491 Medicago truncatula
Medtr3g071640 2.0kb upstream 2.0kb upstream 2000 false chr3: 32167128-32169127 Medicago truncatula
Medtr3g071640 2.0kb downstream 2.0kb downstream 9364 true chr3: 32169128-32178491 Medicago truncatula
Medtr3g071640 2.0kb downstream 2.0kb downstream 2000 false chr3: 32176492-32178491 Medicago truncatula
Medtr3g071640 5.0kb upstream 5.0kb upstream 12364 true chr3: 32164128-32176491 Medicago truncatula
Medtr3g071640 5.0kb upstream 5.0kb upstream 5000 false chr3: 32164128-32169127 Medicago truncatula
Medtr3g071640 5.0kb downstream 5.0kb downstream 12364 true chr3: 32169128-32181491 Medicago truncatula
Medtr3g071640 5.0kb downstream 5.0kb downstream 5000 false chr3: 32176492-32181491 Medicago truncatula
Medtr3g071640 10.0kb upstream 10.0kb upstream 17364 true chr3: 32159128-32176491 Medicago truncatula
Medtr3g071640 10.0kb upstream 10.0kb upstream 10000 false chr3: 32159128-32169127 Medicago truncatula
Medtr3g071640 10.0kb downstream 10.0kb downstream 17364 true chr3: 32169128-32186491 Medicago truncatula
Medtr3g071640 10.0kb downstream 10.0kb downstream 10000 false chr3: 32176492-32186491 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305353 5265 Fabidae View MSA
124061668 5270 Rosid View MSA
123744044 5271 Pentapetalae View MSA
122786177 5272 Eudicot View MSA
122046293 5273 Angiosperm View MSA
121344129 5274 Embryophyte View MSA
123379979 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.167       High
cufflinks 0.542        
cufflinks 0.581        
cufflinks 0.51        
cufflinks 0.648        
cufflinks 0.257       Low
cufflinks 0.647        
cufflinks 0.463        
cufflinks 0.714        

0 Strain