Gene : Medtr3g060220 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR13301//PTHR13301:SF54 - X-BOX TRANSCRIPTION FACTOR-RELATED Description:  cellulose synthase-like protein
Genomic Order:  2452 Name:  ? Medtr3g060220
Secondary Identifier:  ? PAC:31060681
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1001 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g060220 0.5kb upstream 0.5kb upstream 7696 true chr3: 23625380-23633075 Medicago truncatula
Medtr3g060220 0.5kb upstream 0.5kb upstream 500 false chr3: 23632576-23633075 Medicago truncatula
Medtr3g060220 0.5kb downstream 0.5kb downstream 7696 true chr3: 23624880-23632575 Medicago truncatula
Medtr3g060220 0.5kb downstream 0.5kb downstream 500 false chr3: 23624880-23625379 Medicago truncatula
Medtr3g060220 1.0kb upstream 1.0kb upstream 8196 true chr3: 23625380-23633575 Medicago truncatula
Medtr3g060220 1.0kb upstream 1.0kb upstream 1000 false chr3: 23632576-23633575 Medicago truncatula
Medtr3g060220 1.0kb downstream 1.0kb downstream 8196 true chr3: 23624380-23632575 Medicago truncatula
Medtr3g060220 1.0kb downstream 1.0kb downstream 1000 false chr3: 23624380-23625379 Medicago truncatula
Medtr3g060220 2.0kb upstream 2.0kb upstream 9196 true chr3: 23625380-23634575 Medicago truncatula
Medtr3g060220 2.0kb upstream 2.0kb upstream 2000 false chr3: 23632576-23634575 Medicago truncatula
Medtr3g060220 2.0kb downstream 2.0kb downstream 9196 true chr3: 23623380-23632575 Medicago truncatula
Medtr3g060220 2.0kb downstream 2.0kb downstream 2000 false chr3: 23623380-23625379 Medicago truncatula
Medtr3g060220 5.0kb upstream 5.0kb upstream 12196 true chr3: 23625380-23637575 Medicago truncatula
Medtr3g060220 5.0kb upstream 5.0kb upstream 5000 false chr3: 23632576-23637575 Medicago truncatula
Medtr3g060220 5.0kb downstream 5.0kb downstream 12196 true chr3: 23620380-23632575 Medicago truncatula
Medtr3g060220 5.0kb downstream 5.0kb downstream 5000 false chr3: 23620380-23625379 Medicago truncatula
Medtr3g060220 10.0kb upstream 10.0kb upstream 17196 true chr3: 23625380-23642575 Medicago truncatula
Medtr3g060220 10.0kb upstream 10.0kb upstream 10000 false chr3: 23632576-23642575 Medicago truncatula
Medtr3g060220 10.0kb downstream 10.0kb downstream 17196 true chr3: 23615380-23632575 Medicago truncatula
Medtr3g060220 10.0kb downstream 10.0kb downstream 10000 false chr3: 23615380-23625379 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315597 5265 Fabidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.745       High
cufflinks 0.471        
cufflinks 0.25        
cufflinks 0.051     Low Low
cufflinks 0.829       High
cufflinks 0.203        
cufflinks 0.172        
cufflinks 0.336        
cufflinks 0.023     Low Low

0 Strain