Gene : Medtr3g058980 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR11064//PTHR11064:SF45 - CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED Description:  nuclear transcription factor Y protein
Genomic Order:  2447 Name:  ? Medtr3g058980
Secondary Identifier:  ? PAC:31055391
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g058980 0.5kb upstream 0.5kb upstream 2481 true chr3: 23568496-23570976 Medicago truncatula
Medtr3g058980 0.5kb upstream 0.5kb upstream 500 false chr3: 23568496-23568995 Medicago truncatula
Medtr3g058980 0.5kb downstream 0.5kb downstream 2481 true chr3: 23568996-23571476 Medicago truncatula
Medtr3g058980 0.5kb downstream 0.5kb downstream 500 false chr3: 23570977-23571476 Medicago truncatula
Medtr3g058980 1.0kb upstream 1.0kb upstream 2981 true chr3: 23567996-23570976 Medicago truncatula
Medtr3g058980 1.0kb upstream 1.0kb upstream 1000 false chr3: 23567996-23568995 Medicago truncatula
Medtr3g058980 1.0kb downstream 1.0kb downstream 2981 true chr3: 23568996-23571976 Medicago truncatula
Medtr3g058980 1.0kb downstream 1.0kb downstream 1000 false chr3: 23570977-23571976 Medicago truncatula
Medtr3g058980 2.0kb upstream 2.0kb upstream 3981 true chr3: 23566996-23570976 Medicago truncatula
Medtr3g058980 2.0kb upstream 2.0kb upstream 2000 false chr3: 23566996-23568995 Medicago truncatula
Medtr3g058980 2.0kb downstream 2.0kb downstream 3981 true chr3: 23568996-23572976 Medicago truncatula
Medtr3g058980 2.0kb downstream 2.0kb downstream 2000 false chr3: 23570977-23572976 Medicago truncatula
Medtr3g058980 5.0kb upstream 5.0kb upstream 6981 true chr3: 23563996-23570976 Medicago truncatula
Medtr3g058980 5.0kb upstream 5.0kb upstream 5000 false chr3: 23563996-23568995 Medicago truncatula
Medtr3g058980 5.0kb downstream 5.0kb downstream 6981 true chr3: 23568996-23575976 Medicago truncatula
Medtr3g058980 5.0kb downstream 5.0kb downstream 5000 false chr3: 23570977-23575976 Medicago truncatula
Medtr3g058980 10.0kb upstream 10.0kb upstream 11981 true chr3: 23558996-23570976 Medicago truncatula
Medtr3g058980 10.0kb upstream 10.0kb upstream 10000 false chr3: 23558996-23568995 Medicago truncatula
Medtr3g058980 10.0kb downstream 10.0kb downstream 11981 true chr3: 23568996-23580976 Medicago truncatula
Medtr3g058980 10.0kb downstream 10.0kb downstream 10000 false chr3: 23570977-23580976 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312378 5265 Fabidae View MSA
124072305 5270 Rosid View MSA
123751737 5271 Pentapetalae View MSA
122797656 5272 Eudicot View MSA
122048596 5273 Angiosperm View MSA
123429094 5275 Viridiplantae View MSA
121350139 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.257     High Low
cufflinks 91.62     High High
cufflinks 83.843     High High
cufflinks 21.19     High  
cufflinks 82.792     High High
cufflinks 11.38     High Low
cufflinks 16.852     High  
cufflinks 75.602     High  
cufflinks 27.836     High  

0 Strain