Gene : Medtr3g060280 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR13301//PTHR13301:SF54 - X-BOX TRANSCRIPTION FACTOR-RELATED Description:  cellulose synthase E1-like protein
Genomic Order:  2457 Name:  ? Medtr3g060280
Secondary Identifier:  ? PAC:31057801
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1001 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g060280 0.5kb upstream 0.5kb upstream 6562 true chr3: 23652185-23658746 Medicago truncatula
Medtr3g060280 0.5kb upstream 0.5kb upstream 500 false chr3: 23658247-23658746 Medicago truncatula
Medtr3g060280 0.5kb downstream 0.5kb downstream 6562 true chr3: 23651685-23658246 Medicago truncatula
Medtr3g060280 0.5kb downstream 0.5kb downstream 500 false chr3: 23651685-23652184 Medicago truncatula
Medtr3g060280 1.0kb upstream 1.0kb upstream 7062 true chr3: 23652185-23659246 Medicago truncatula
Medtr3g060280 1.0kb upstream 1.0kb upstream 1000 false chr3: 23658247-23659246 Medicago truncatula
Medtr3g060280 1.0kb downstream 1.0kb downstream 7062 true chr3: 23651185-23658246 Medicago truncatula
Medtr3g060280 1.0kb downstream 1.0kb downstream 1000 false chr3: 23651185-23652184 Medicago truncatula
Medtr3g060280 2.0kb upstream 2.0kb upstream 8062 true chr3: 23652185-23660246 Medicago truncatula
Medtr3g060280 2.0kb upstream 2.0kb upstream 2000 false chr3: 23658247-23660246 Medicago truncatula
Medtr3g060280 2.0kb downstream 2.0kb downstream 8062 true chr3: 23650185-23658246 Medicago truncatula
Medtr3g060280 2.0kb downstream 2.0kb downstream 2000 false chr3: 23650185-23652184 Medicago truncatula
Medtr3g060280 5.0kb upstream 5.0kb upstream 11062 true chr3: 23652185-23663246 Medicago truncatula
Medtr3g060280 5.0kb upstream 5.0kb upstream 5000 false chr3: 23658247-23663246 Medicago truncatula
Medtr3g060280 5.0kb downstream 5.0kb downstream 11062 true chr3: 23647185-23658246 Medicago truncatula
Medtr3g060280 5.0kb downstream 5.0kb downstream 5000 false chr3: 23647185-23652184 Medicago truncatula
Medtr3g060280 10.0kb upstream 10.0kb upstream 16062 true chr3: 23652185-23668246 Medicago truncatula
Medtr3g060280 10.0kb upstream 10.0kb upstream 10000 false chr3: 23658247-23668246 Medicago truncatula
Medtr3g060280 10.0kb downstream 10.0kb downstream 16062 true chr3: 23642185-23658246 Medicago truncatula
Medtr3g060280 10.0kb downstream 10.0kb downstream 10000 false chr3: 23642185-23652184 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299327 5265 Fabidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.371        
cufflinks 1.749       Low
cufflinks 3.027        
cufflinks 5.023        
cufflinks 1.518       Low
cufflinks 6.174       High
cufflinks 8.205       High
cufflinks 1.85        
cufflinks 2.823        

0 Strain