Gene : Medtr3g060240 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR13301//PTHR13301:SF54 - X-BOX TRANSCRIPTION FACTOR-RELATED Description:  cellulose synthase E1-like protein
Genomic Order:  2454 Name:  ? Medtr3g060240
Secondary Identifier:  ? PAC:31060485
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1001 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g060240 0.5kb upstream 0.5kb upstream 5423 true chr3: 23638774-23644196 Medicago truncatula
Medtr3g060240 0.5kb upstream 0.5kb upstream 500 false chr3: 23643697-23644196 Medicago truncatula
Medtr3g060240 0.5kb downstream 0.5kb downstream 5423 true chr3: 23638274-23643696 Medicago truncatula
Medtr3g060240 0.5kb downstream 0.5kb downstream 500 false chr3: 23638274-23638773 Medicago truncatula
Medtr3g060240 1.0kb upstream 1.0kb upstream 5923 true chr3: 23638774-23644696 Medicago truncatula
Medtr3g060240 1.0kb upstream 1.0kb upstream 1000 false chr3: 23643697-23644696 Medicago truncatula
Medtr3g060240 1.0kb downstream 1.0kb downstream 5923 true chr3: 23637774-23643696 Medicago truncatula
Medtr3g060240 1.0kb downstream 1.0kb downstream 1000 false chr3: 23637774-23638773 Medicago truncatula
Medtr3g060240 2.0kb upstream 2.0kb upstream 6923 true chr3: 23638774-23645696 Medicago truncatula
Medtr3g060240 2.0kb upstream 2.0kb upstream 2000 false chr3: 23643697-23645696 Medicago truncatula
Medtr3g060240 2.0kb downstream 2.0kb downstream 6923 true chr3: 23636774-23643696 Medicago truncatula
Medtr3g060240 2.0kb downstream 2.0kb downstream 2000 false chr3: 23636774-23638773 Medicago truncatula
Medtr3g060240 5.0kb upstream 5.0kb upstream 9923 true chr3: 23638774-23648696 Medicago truncatula
Medtr3g060240 5.0kb upstream 5.0kb upstream 5000 false chr3: 23643697-23648696 Medicago truncatula
Medtr3g060240 5.0kb downstream 5.0kb downstream 9923 true chr3: 23633774-23643696 Medicago truncatula
Medtr3g060240 5.0kb downstream 5.0kb downstream 5000 false chr3: 23633774-23638773 Medicago truncatula
Medtr3g060240 10.0kb upstream 10.0kb upstream 14923 true chr3: 23638774-23653696 Medicago truncatula
Medtr3g060240 10.0kb upstream 10.0kb upstream 10000 false chr3: 23643697-23653696 Medicago truncatula
Medtr3g060240 10.0kb downstream 10.0kb downstream 14923 true chr3: 23628774-23643696 Medicago truncatula
Medtr3g060240 10.0kb downstream 10.0kb downstream 10000 false chr3: 23628774-23638773 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315597 5265 Fabidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.047     Low Low
cufflinks 5.314        
cufflinks 1.4        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 5.181        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.387        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain