Gene : Medtr3g062440 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31194//PTHR31194:SF6 - SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR Description:  integrase-type DNA-binding superfamily protein
Genomic Order:  3024 Name:  ? Medtr3g062440
Secondary Identifier:  ? PAC:31055206
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g062440 0.5kb upstream 0.5kb upstream 2151 true chr3: 28189644-28191794 Medicago truncatula
Medtr3g062440 0.5kb upstream 0.5kb upstream 500 false chr3: 28191295-28191794 Medicago truncatula
Medtr3g062440 0.5kb downstream 0.5kb downstream 2151 true chr3: 28189144-28191294 Medicago truncatula
Medtr3g062440 0.5kb downstream 0.5kb downstream 500 false chr3: 28189144-28189643 Medicago truncatula
Medtr3g062440 1.0kb upstream 1.0kb upstream 2651 true chr3: 28189644-28192294 Medicago truncatula
Medtr3g062440 1.0kb upstream 1.0kb upstream 1000 false chr3: 28191295-28192294 Medicago truncatula
Medtr3g062440 1.0kb downstream 1.0kb downstream 2651 true chr3: 28188644-28191294 Medicago truncatula
Medtr3g062440 1.0kb downstream 1.0kb downstream 1000 false chr3: 28188644-28189643 Medicago truncatula
Medtr3g062440 2.0kb upstream 2.0kb upstream 3651 true chr3: 28189644-28193294 Medicago truncatula
Medtr3g062440 2.0kb upstream 2.0kb upstream 2000 false chr3: 28191295-28193294 Medicago truncatula
Medtr3g062440 2.0kb downstream 2.0kb downstream 3651 true chr3: 28187644-28191294 Medicago truncatula
Medtr3g062440 2.0kb downstream 2.0kb downstream 2000 false chr3: 28187644-28189643 Medicago truncatula
Medtr3g062440 5.0kb upstream 5.0kb upstream 6651 true chr3: 28189644-28196294 Medicago truncatula
Medtr3g062440 5.0kb upstream 5.0kb upstream 5000 false chr3: 28191295-28196294 Medicago truncatula
Medtr3g062440 5.0kb downstream 5.0kb downstream 6651 true chr3: 28184644-28191294 Medicago truncatula
Medtr3g062440 5.0kb downstream 5.0kb downstream 5000 false chr3: 28184644-28189643 Medicago truncatula
Medtr3g062440 10.0kb upstream 10.0kb upstream 11651 true chr3: 28189644-28201294 Medicago truncatula
Medtr3g062440 10.0kb upstream 10.0kb upstream 10000 false chr3: 28191295-28201294 Medicago truncatula
Medtr3g062440 10.0kb downstream 10.0kb downstream 11651 true chr3: 28179644-28191294 Medicago truncatula
Medtr3g062440 10.0kb downstream 10.0kb downstream 10000 false chr3: 28179644-28189643 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296641 5265 Fabidae View MSA
124071112 5270 Rosid View MSA
123744943 5271 Pentapetalae View MSA
122797737 5272 Eudicot View MSA
122048577 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.068     High High
cufflinks 10.818     High  
cufflinks 10.829     High  
cufflinks 29.731     High High
cufflinks 28.141     High High
cufflinks 8.494       Low
cufflinks 11.696     High  
cufflinks 12.443     High  
cufflinks 15.946     High  

0 Strain