Gene : Medtr3g099470 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11778:SF0 - SERINE--TRNA LIGASE, MITOCHONDRIAL Description:  seryl-tRNA synthetase/serine-tRNA ligase
Genomic Order:  5410 Name:  ? Medtr3g099470
Secondary Identifier:  ? PAC:31055810
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6281 Medicago truncatula pathologic  
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g099470 0.5kb upstream 0.5kb upstream 4577 true chr3: 45589341-45593917 Medicago truncatula
Medtr3g099470 0.5kb upstream 0.5kb upstream 500 false chr3: 45589341-45589840 Medicago truncatula
Medtr3g099470 0.5kb downstream 0.5kb downstream 4577 true chr3: 45589841-45594417 Medicago truncatula
Medtr3g099470 0.5kb downstream 0.5kb downstream 500 false chr3: 45593918-45594417 Medicago truncatula
Medtr3g099470 1.0kb upstream 1.0kb upstream 5077 true chr3: 45588841-45593917 Medicago truncatula
Medtr3g099470 1.0kb upstream 1.0kb upstream 1000 false chr3: 45588841-45589840 Medicago truncatula
Medtr3g099470 1.0kb downstream 1.0kb downstream 5077 true chr3: 45589841-45594917 Medicago truncatula
Medtr3g099470 1.0kb downstream 1.0kb downstream 1000 false chr3: 45593918-45594917 Medicago truncatula
Medtr3g099470 2.0kb upstream 2.0kb upstream 6077 true chr3: 45587841-45593917 Medicago truncatula
Medtr3g099470 2.0kb upstream 2.0kb upstream 2000 false chr3: 45587841-45589840 Medicago truncatula
Medtr3g099470 2.0kb downstream 2.0kb downstream 6077 true chr3: 45589841-45595917 Medicago truncatula
Medtr3g099470 2.0kb downstream 2.0kb downstream 2000 false chr3: 45593918-45595917 Medicago truncatula
Medtr3g099470 5.0kb upstream 5.0kb upstream 9077 true chr3: 45584841-45593917 Medicago truncatula
Medtr3g099470 5.0kb upstream 5.0kb upstream 5000 false chr3: 45584841-45589840 Medicago truncatula
Medtr3g099470 5.0kb downstream 5.0kb downstream 9077 true chr3: 45589841-45598917 Medicago truncatula
Medtr3g099470 5.0kb downstream 5.0kb downstream 5000 false chr3: 45593918-45598917 Medicago truncatula
Medtr3g099470 10.0kb upstream 10.0kb upstream 14077 true chr3: 45579841-45593917 Medicago truncatula
Medtr3g099470 10.0kb upstream 10.0kb upstream 10000 false chr3: 45579841-45589840 Medicago truncatula
Medtr3g099470 10.0kb downstream 10.0kb downstream 14077 true chr3: 45589841-45603917 Medicago truncatula
Medtr3g099470 10.0kb downstream 10.0kb downstream 10000 false chr3: 45593918-45603917 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301777 5265 Fabidae View MSA
124074907 5270 Rosid View MSA
123738384 5271 Pentapetalae View MSA
122793450 5272 Eudicot View MSA
122045874 5273 Angiosperm View MSA
121344249 5274 Embryophyte View MSA
123424928 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.74        
cufflinks 4.488        
cufflinks 6.743        
cufflinks 0.427        
cufflinks 6.747        
cufflinks 0.031     Low Low
cufflinks 0.349        
cufflinks 7.054       High
cufflinks 0.251        

0 Strain