Gene : Medtr3g100910 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED Description:  prolyl-tRNA synthetase family protein
Genomic Order:  5508 Name:  ? Medtr3g100910
Secondary Identifier:  ? PAC:31060312
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g100910 0.5kb upstream 0.5kb upstream 6348 true chr3: 46429583-46435930 Medicago truncatula
Medtr3g100910 0.5kb upstream 0.5kb upstream 500 false chr3: 46435431-46435930 Medicago truncatula
Medtr3g100910 0.5kb downstream 0.5kb downstream 6348 true chr3: 46429083-46435430 Medicago truncatula
Medtr3g100910 0.5kb downstream 0.5kb downstream 500 false chr3: 46429083-46429582 Medicago truncatula
Medtr3g100910 1.0kb upstream 1.0kb upstream 6848 true chr3: 46429583-46436430 Medicago truncatula
Medtr3g100910 1.0kb upstream 1.0kb upstream 1000 false chr3: 46435431-46436430 Medicago truncatula
Medtr3g100910 1.0kb downstream 1.0kb downstream 6848 true chr3: 46428583-46435430 Medicago truncatula
Medtr3g100910 1.0kb downstream 1.0kb downstream 1000 false chr3: 46428583-46429582 Medicago truncatula
Medtr3g100910 2.0kb upstream 2.0kb upstream 7848 true chr3: 46429583-46437430 Medicago truncatula
Medtr3g100910 2.0kb upstream 2.0kb upstream 2000 false chr3: 46435431-46437430 Medicago truncatula
Medtr3g100910 2.0kb downstream 2.0kb downstream 7848 true chr3: 46427583-46435430 Medicago truncatula
Medtr3g100910 2.0kb downstream 2.0kb downstream 2000 false chr3: 46427583-46429582 Medicago truncatula
Medtr3g100910 5.0kb upstream 5.0kb upstream 10848 true chr3: 46429583-46440430 Medicago truncatula
Medtr3g100910 5.0kb upstream 5.0kb upstream 5000 false chr3: 46435431-46440430 Medicago truncatula
Medtr3g100910 5.0kb downstream 5.0kb downstream 10848 true chr3: 46424583-46435430 Medicago truncatula
Medtr3g100910 5.0kb downstream 5.0kb downstream 5000 false chr3: 46424583-46429582 Medicago truncatula
Medtr3g100910 10.0kb upstream 10.0kb upstream 15848 true chr3: 46429583-46445430 Medicago truncatula
Medtr3g100910 10.0kb upstream 10.0kb upstream 10000 false chr3: 46435431-46445430 Medicago truncatula
Medtr3g100910 10.0kb downstream 10.0kb downstream 15848 true chr3: 46419583-46435430 Medicago truncatula
Medtr3g100910 10.0kb downstream 10.0kb downstream 10000 false chr3: 46419583-46429582 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308637 5265 Fabidae View MSA
124067863 5270 Rosid View MSA
123737640 5271 Pentapetalae View MSA
122793581 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.15        
cufflinks 8.48        
cufflinks 6.377        
cufflinks 0.463       Low
cufflinks 10.355     High High
cufflinks 0.303       Low
cufflinks 1.012        
cufflinks 8.51       High
cufflinks 1.503        

0 Strain