Gene : Medtr3g100940 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12869 - SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN Description:  seven transmembrane domain protein
Genomic Order:  5509 Name:  ? Medtr3g100940
Secondary Identifier:  ? PAC:31058024
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g100940 0.5kb upstream 0.5kb upstream 3947 true chr3: 46446845-46450791 Medicago truncatula
Medtr3g100940 0.5kb upstream 0.5kb upstream 500 false chr3: 46446845-46447344 Medicago truncatula
Medtr3g100940 0.5kb downstream 0.5kb downstream 3947 true chr3: 46447345-46451291 Medicago truncatula
Medtr3g100940 0.5kb downstream 0.5kb downstream 500 false chr3: 46450792-46451291 Medicago truncatula
Medtr3g100940 1.0kb upstream 1.0kb upstream 4447 true chr3: 46446345-46450791 Medicago truncatula
Medtr3g100940 1.0kb upstream 1.0kb upstream 1000 false chr3: 46446345-46447344 Medicago truncatula
Medtr3g100940 1.0kb downstream 1.0kb downstream 4447 true chr3: 46447345-46451791 Medicago truncatula
Medtr3g100940 1.0kb downstream 1.0kb downstream 1000 false chr3: 46450792-46451791 Medicago truncatula
Medtr3g100940 2.0kb upstream 2.0kb upstream 5447 true chr3: 46445345-46450791 Medicago truncatula
Medtr3g100940 2.0kb upstream 2.0kb upstream 2000 false chr3: 46445345-46447344 Medicago truncatula
Medtr3g100940 2.0kb downstream 2.0kb downstream 5447 true chr3: 46447345-46452791 Medicago truncatula
Medtr3g100940 2.0kb downstream 2.0kb downstream 2000 false chr3: 46450792-46452791 Medicago truncatula
Medtr3g100940 5.0kb upstream 5.0kb upstream 8447 true chr3: 46442345-46450791 Medicago truncatula
Medtr3g100940 5.0kb upstream 5.0kb upstream 5000 false chr3: 46442345-46447344 Medicago truncatula
Medtr3g100940 5.0kb downstream 5.0kb downstream 8447 true chr3: 46447345-46455791 Medicago truncatula
Medtr3g100940 5.0kb downstream 5.0kb downstream 5000 false chr3: 46450792-46455791 Medicago truncatula
Medtr3g100940 10.0kb upstream 10.0kb upstream 13447 true chr3: 46437345-46450791 Medicago truncatula
Medtr3g100940 10.0kb upstream 10.0kb upstream 10000 false chr3: 46437345-46447344 Medicago truncatula
Medtr3g100940 10.0kb downstream 10.0kb downstream 13447 true chr3: 46447345-46460791 Medicago truncatula
Medtr3g100940 10.0kb downstream 10.0kb downstream 10000 false chr3: 46450792-46460791 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301973 5265 Fabidae View MSA
124064823 5270 Rosid View MSA
123746245 5271 Pentapetalae View MSA
122789833 5272 Eudicot View MSA
122046816 5273 Angiosperm View MSA
121343820 5274 Embryophyte View MSA
123379923 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.734       Low
cufflinks 7.207        
cufflinks 6.411        
cufflinks 11.551     High High
cufflinks 8.075        
cufflinks 5.567        
cufflinks 5.902        
cufflinks 5.428        
cufflinks 8.356        

0 Strain