Gene : Medtr3g100550 M. truncatula Mt4.0v1
Description:  peptide upstream ORF protein Genomic Order:  5490
Name:  ? Medtr3g100550 Secondary Identifier:  ? PAC:31059311
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g100550 0.5kb upstream 0.5kb upstream 1924 true chr3: 46244690-46246613 Medicago truncatula
Medtr3g100550 0.5kb upstream 0.5kb upstream 500 false chr3: 46246114-46246613 Medicago truncatula
Medtr3g100550 0.5kb downstream 0.5kb downstream 1924 true chr3: 46244190-46246113 Medicago truncatula
Medtr3g100550 0.5kb downstream 0.5kb downstream 500 false chr3: 46244190-46244689 Medicago truncatula
Medtr3g100550 1.0kb upstream 1.0kb upstream 2424 true chr3: 46244690-46247113 Medicago truncatula
Medtr3g100550 1.0kb upstream 1.0kb upstream 1000 false chr3: 46246114-46247113 Medicago truncatula
Medtr3g100550 1.0kb downstream 1.0kb downstream 2424 true chr3: 46243690-46246113 Medicago truncatula
Medtr3g100550 1.0kb downstream 1.0kb downstream 1000 false chr3: 46243690-46244689 Medicago truncatula
Medtr3g100550 2.0kb upstream 2.0kb upstream 3424 true chr3: 46244690-46248113 Medicago truncatula
Medtr3g100550 2.0kb upstream 2.0kb upstream 2000 false chr3: 46246114-46248113 Medicago truncatula
Medtr3g100550 2.0kb downstream 2.0kb downstream 3424 true chr3: 46242690-46246113 Medicago truncatula
Medtr3g100550 2.0kb downstream 2.0kb downstream 2000 false chr3: 46242690-46244689 Medicago truncatula
Medtr3g100550 5.0kb upstream 5.0kb upstream 6424 true chr3: 46244690-46251113 Medicago truncatula
Medtr3g100550 5.0kb upstream 5.0kb upstream 5000 false chr3: 46246114-46251113 Medicago truncatula
Medtr3g100550 5.0kb downstream 5.0kb downstream 6424 true chr3: 46239690-46246113 Medicago truncatula
Medtr3g100550 5.0kb downstream 5.0kb downstream 5000 false chr3: 46239690-46244689 Medicago truncatula
Medtr3g100550 10.0kb upstream 10.0kb upstream 11424 true chr3: 46244690-46256113 Medicago truncatula
Medtr3g100550 10.0kb upstream 10.0kb upstream 10000 false chr3: 46246114-46256113 Medicago truncatula
Medtr3g100550 10.0kb downstream 10.0kb downstream 11424 true chr3: 46234690-46246113 Medicago truncatula
Medtr3g100550 10.0kb downstream 10.0kb downstream 10000 false chr3: 46234690-46244689 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122260596 5265 Fabidae Singleton cluster - no MSA
124069630 5270 Rosid View MSA
123742961 5271 Pentapetalae View MSA
122797031 5272 Eudicot View MSA
122042492 5273 Angiosperm View MSA
121309977 5274 Embryophyte View MSA
123347591 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.057     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.131        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low Low

0 Strain